Table 8.
Gene Prediction Accuracy in Terms of Avg(Sn,Sp) Observed for the 10 Genomes
| Species name | Type of atypical model (cluster) | |||||
| 2A | 2B | 2C | 3A | 3B | 3C | |
| A. fulgidus | 0.953 (0.952) | 0.953 (0.954 | ||||
| B. subtilis | 0.949 (0.942) | 0.943 (0.936) | 0.951 (0.945) | 0.950 (0.943) | 0.943 (0.933) | 0.951 (0.947) |
| E. coli | 0.956 (0.956) | 0.953 (0.950) | 0.959 (0.958) | 0.957 (0.956) | 0.956 (0.952) | 0.959 (0.058) |
| H. influenzae | 0.955 (0.954) | 0.953 (0.953) | 0.953 (0.954) | 0.955 (0.956) | 0.954 (0.954) | 0.955 (0.955) |
| H. pylori | 0.950 (0.950) | 0.950 (0.951) | 0.949 (0.948) | 0.948 (0.950) | 0.950 (0.950) | 0.948 (0.948) |
| M. genitalium | 0.924 (0.931) | 0.927 (0.931) | 0.924 (0.927) | 0.925 (0.929) | 0.928 (0.932) | 0.922 (0.925) |
| M. jannaschii | 0.974 (0.974) | 0.974 (0.974) | 0.974 (0.974) | 0.975 (0.973) | 0.974 (0.974) | 0.975 (0.972) |
| M. pneumoniae | 0.925 (0.921) | 0.925 (0.927) | 0.917 (0.913) | 0.923 (0.921) | 0.927 (0.927) | 0.924 (0.922) |
| M. thermoautotrophicum | 0.972 (0.969) | 0.970 (0.970) | ||||
| Synechocystis | 0.968 (0.967) | 0.965 (0.966) | 0.968 (0.968) | 0.968 (0.968) | 0.966 (0.966) | 0.969 (0.969) |
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The gene-finding program GeneMark included models derived from typical and atypical clusters. The results obtained by using preclustering cross-validation are shown in parenetheses (in italics). All other data were obtained by using postclustering cross-validation. See Table 7 for explanation of boldface numbers.
