Sequence Conservation of Transcribed and Noncoding Regions
| Sum length (transcribed) | Sum length (noncoding) | Weighted conservation (% transcribed) | Weighted conservation (% noncoding) | |
| CD4 | 1492 | 2435 | 71.93 | 69.60 |
| A | 2310 | 1245 | 86.89 | 75.66 |
| B | 1648 | 1347 | 86.15 | 69.27 |
| GNB3 | 1319 | 846 | 87.28 | 69.89 |
| C8 | 1073 | 298 | 77.99 | 70.76 |
| ISOT | 2792 | 2961 | 90.49 | 72.81 |
| TPI | 1139 | 761 | 81.96 | 70.80 |
| C9 | 791 | 83 | 87.35 | 66.41 |
| B7 | 1117 | 862 | 79.84 | 69.45 |
| ENO-2 | 1646 | 1507 | 88.39 | 73.40 |
| DRPLA | 3853 | 1621 | 89.05 | 73.36 |
| C10 | 447 | 70 | 85.17 | 74.31 |
| PTPN6 | 2007 | 1996 | 87.31 | 71.55 |
| BAP | 1110 | 1007 | 87.66 | 73.59 |
| C2f | 850 | 252 | 82.70 | 70.04 |
| C3f | 1343 | 637 | 88.88 | 73.47 |
| Intergenic regions | 7241 | 74.63 | ||
| Totals | 24,937 | 25,169 | 85.90 | 72.65 |
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The gap-free segments (⩾50 bp) showing sequence identity (⩾60%) were extracted from SIM alignments using the modified version of CONSERVED. Based on coordinates of exons, the alignments were divided into transcribed and noncoding regions. ESTs that do not correspond to known gene-specific mRNAs were not included in the calculation for transcribed regions. Because the transcription initiation site for some of the genes in this region is not known, the conserved intergenic noncoding segments were calculated separately. For each gene, a weighted percent identity was calculated by ΣCi Fi/N, where Ci is the length in base pairs of each individual aligned sequence of either transcribed or noncoding sequence, Fi is the percent of identity of the aligned sequence, and N is the total number in base pairs of compared transcribed or noncoding sequence.
