Table 4.
Potential Promoter Elements Predicted by TSSG, TSSW, and PSII Algorithms
| No. | Score | TSSG TATA | Start | Score | TSSW TATA | Start | Score | PSII TATA | Start |
| F1 | 13.3 | 714 | 743 | — | — | — | |||
| R1 | 8.1 | 10,359 | 10,342 | 8.7 | — | 10,393 | |||
| F2 | 7.0 | — | 10,513 | 9.9 | — | 10,513 | |||
| F3 | 6.7 | 14,699 | 14,739 | 9.3 | 14,699 | 14,739 | |||
| R2 | 16.9 | 74,575 | 74,546 | — | — | — | |||
| F4 | 60.5 | 75,512 | 75,542 | ||||||
| R3 | 15.1 | 80,433 | 80,404 | — | — | — | |||
| F5 | 13.4 | — | 90,302 | — | — | — | |||
| R4 | 73.7 | 115,070 | 115,040 | ||||||
| F6 | 9.7 | 132,369 | 132,399 | 9.8 | 132,369 | 132,399 | |||
| F7 | 59.9 | 141,310 | 141,340 | ||||||
| F8 | 10.0 | 144,768 | 144,810 | — | — | — | |||
| R5 | 7.5 | 176,805 | 176,775 | 9.8 | 176,805 | 176,773 |
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To limit the output of these programs to high-score predictions, the cutoff values were adjusted to 8, 9, and 55. Predictions with lower score values were reported only when the score value of this element exceeded the respective cutoff score in one of the other programs.
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↵(F) Promoter oriented forward with respect to ATMtranscription; (R) reverse orientation.
