Centromeric instability and chromoanasynthesis observed in nine supernumerary marker chromosomes resolved with long-read genome sequencing

Table 1.

Overview of the studied sSMCs

Case ID Previous publication Clinical summary Gender Cytogenomic description Genome data Tissue Mosaicism degree (%) Resolved
RD_P276 Anderlid et al. 2001 ID, DD, DF Male + r(5)(p13.3 → p13.2::p12 → q11.1) srGS, lrGS Blood 13 Yes
RD_P278 Anderlid et al. 2001; Blennow et al. 1993 DF, neurological problems Male + r(7)(p11.2 → p11.2::q11.22 → p11.2) srGS, lrGS Blood 100 Yes
RD_P273 Anderlid et al. 2001 DF, DD Female + r(8)(q11.1 → q11.21::q21.13 → q11.22) srGS, lrGS LCL 40 Yes
RD_P272 Anderlid et al. 2001 ID, DD Female + r(9)(p21.1 → p21.1::q21.31 → q21.31::p12→p21.1::p11.2 → ?::? → p21.1) srGS, lrGS Blood 36 Yesa
RD_P274 Unpublished ID, DF Male + r(10)(p12 → p11.2) srGS, lrGS LCL 66 No
RD_P166 Unpublished DD, short stature Female + r(13)(? → p11.2::q21.1 → q31.1::q12.3 → ?) srGS, lrGS LCL 87 Yesb
RD_P550 Unpublished Short stature Female + r(14)(p11.2q11.2) lrGS, OGM Blood 46 Yes
RD_P275 Anderlid et al. 2001 ID, DD Male + r(20)(p13 → p13::q13.31 → q13.33::p11.21 → q12) srGS, lrGS LCL 48 Yes
RD_P328 Blennow et al. 1992 ID, DD Female + der(7)(Xpter → Xp22.2::7q11.23 → 7p13::5q35.3 → 5qter) srGS, lrGS LCL 100 Yes
RD_P586 Unpublished Mild ID, ataxia Female + der(X)(qter → q27.3::q22.3 → q21.31::q21.31 → q21.2::q12 → q12::p11.1 → q13.3::q27.3 → q27.2::q21.1 → q21.2::q13.3 → q21.1::q21.31 → q21.31::q27.3 → qter) lrGS, OGM Blood 100 Yes
  • (ID) Intellectual disability; (DD) developmental delay; (DF) dysmorphic features; (LCL) lymphoblastoid cell lines.

  • aCentromeric breakpoints are not mapped.

  • bBreakpoints on acrocentric p-arm are not mapped. Full ISCN and HGVS nomenclature is in Supplemental Table S3.

This Article

  1. Genome Res. 36: 661-670

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