Figure 3.
ScPGE prioritizes cell type–specific cCREs. (A) Schematic overview of prioritizing active cCREs by ScPGE's attentions. (B) The performance (PRAUC) of relevant methods in classifying cCRE–gene pairs at different distance groups. (C) Visualization of active cCREs of the JUNB gene prioritized by ScPGE (attention), ScPGE (perturbation), EPIformer, CREaTor, and Enformer, where validated cCREs are represented by red rectangles and correctly identified cCREs are represented by blue rectangles with red outlines.
