A scalable computational framework for predicting gene expression from candidate cis-regulatory elements

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Figure 2.
Figure 2.

Overall performance of ScPGE. (A) The performance of ScPGE in predicting RNA-seq gene expression levels, which was measured by PCC and MAE. (B) The performance of ScPGE in predicting CAGE-seq gene expression levels, which was measured by PCC and MAE. The P-value is calculated using Student's t-test. (C–F) The performance (PCC) of ScPGE's scalability by modifying the number of epigenomic tracks, the number of cCREs, and the structure of ScPGE.

This Article

  1. Published in Advance January 16, 2026, doi: 10.1101/gr.281219.125 Genome Res. 36: 361-374

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