Index by Author

September 2025; 35 (9)
  1. A
  2. B
  3. C
  4. D
  5. E
  6. F
  7. G
  8. H
  9. I
  10. J
  11. K
  12. L
  13. M
  14. N
  15. O
  16. P
  17. Q
  18. R
  19. S
  20. T
  21. U
  22. V
  23. W
  24. X
  25. Y
  26. Z

A

  1. Aerden, Mio

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

  2. Arndt, Karen M.

    • ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies Genome Res. September 2025 35: 2041-2051; Published in Advance August 7, 2025, doi:10.1101/gr.280586.125

  3. Asprino, Paula F.

    • Alternative splicing generates HER2 isoform diversity underlying antibody–drug conjugate resistance in breast cancer Genome Res. September 2025 35: 1942-1958; Published in Advance July 15, 2025, doi:10.1101/gr.280304.124

  4. Aunins, Thomas

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

B

  1. Bammidi, Lakshmi Sowjanya

  2. Bao, Qi

    • Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs Genome Res. September 2025 35: 2116-2129; Published in Advance June 16, 2025, doi:10.1101/gr.280095.124

  3. Bariha, Girija S.

  4. Baro, Runumi

  5. Battle, Alexis

    • Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks Genome Res. September 2025 35: 2087-2103; Published in Advance July 17, 2025, doi:10.1101/gr.280808.125
      OPEN ACCESS ARTICLE

  6. Becelaere, Sara

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

  7. Biagini, Simone Andrea

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

  8. Birbrair, Alexander

    • Alternative splicing generates HER2 isoform diversity underlying antibody–drug conjugate resistance in breast cancer Genome Res. September 2025 35: 1942-1958; Published in Advance July 15, 2025, doi:10.1101/gr.280304.124

  9. Bouckaert, Shaun M.

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

  10. Breckpot, Jeroen

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

C

  1. Cai, Jingtao

  2. Camargo, Anamaria A.

    • Alternative splicing generates HER2 isoform diversity underlying antibody–drug conjugate resistance in breast cancer Genome Res. September 2025 35: 1942-1958; Published in Advance July 15, 2025, doi:10.1101/gr.280304.124

  3. Canson, Daffodil M.

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

  4. Chakraborty, Mahul

    • Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome Genome Res. September 2025 35: 2023-2040; Published in Advance July 16, 2025, doi:10.1101/gr.280728.125
      OPEN ACCESS ARTICLE

  5. Chang, Aaron N.

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

  6. Chanock, Stephen

    • Genotyping of selected germline adaptive immune system loci using short-read sequencing data Genome Res. September 2025 35: 2076-2086; Published in Advance August 5, 2025, doi:10.1101/gr.280314.124
      OPEN ACCESS ARTICLE

  7. Charlat, Sylvain

    • Phylogenetic relatedness rather than aquatic habitat fosters horizontal transfer of transposable elements in animals Genome Res. September 2025 35: 2011-2022; Published in Advance August 8, 2025, doi:10.1101/gr.280432.125

  8. Chikina, Maria

    • ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies Genome Res. September 2025 35: 2041-2051; Published in Advance August 7, 2025, doi:10.1101/gr.280586.125

  9. Clark, Nathan

    • ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies Genome Res. September 2025 35: 2041-2051; Published in Advance August 7, 2025, doi:10.1101/gr.280586.125

  10. Cleynen, Isabelle

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

  11. Collier, Maria D.

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

  12. COVNET Consortium

    • Genotyping of selected germline adaptive immune system loci using short-read sequencing data Genome Res. September 2025 35: 2076-2086; Published in Advance August 5, 2025, doi:10.1101/gr.280314.124
      OPEN ACCESS ARTICLE

  13. Cui, Xiaonan

D

  1. Davidson, Aimee L.

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

  2. Devriendt, Koenraad

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

  3. Ding, Tianli

    • Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs Genome Res. September 2025 35: 2116-2129; Published in Advance June 16, 2025, doi:10.1101/gr.280095.124

  4. Dong, Xue

  5. dos Anjos, Carlos H.

    • Alternative splicing generates HER2 isoform diversity underlying antibody–drug conjugate resistance in breast cancer Genome Res. September 2025 35: 1942-1958; Published in Advance July 15, 2025, doi:10.1101/gr.280304.124

  6. dos Santos, Filipe F.

    • Alternative splicing generates HER2 isoform diversity underlying antibody–drug conjugate resistance in breast cancer Genome Res. September 2025 35: 1942-1958; Published in Advance July 15, 2025, doi:10.1101/gr.280304.124

  7. Duffield, Jeremy S.

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

  8. Dumenil, Troy

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

E

  1. Emerson, J.J.

    • Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome Genome Res. September 2025 35: 2023-2040; Published in Advance July 16, 2025, doi:10.1101/gr.280728.125
      OPEN ACCESS ARTICLE

F

  1. Ford, Michael K.B.

    • Genotyping of selected germline adaptive immune system loci using short-read sequencing data Genome Res. September 2025 35: 2076-2086; Published in Advance August 5, 2025, doi:10.1101/gr.280314.124
      OPEN ACCESS ARTICLE

  2. Francette, Alex Michael

    • ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies Genome Res. September 2025 35: 2041-2051; Published in Advance August 7, 2025, doi:10.1101/gr.280586.125

G

  1. Galante, Pedro A.F.

    • Alternative splicing generates HER2 isoform diversity underlying antibody–drug conjugate resistance in breast cancer Genome Res. September 2025 35: 1942-1958; Published in Advance July 15, 2025, doi:10.1101/gr.280304.124

  2. Gayen, Srimonta

  3. Gilbert, Clément

    • Phylogenetic relatedness rather than aquatic habitat fosters horizontal transfer of transposable elements in animals Genome Res. September 2025 35: 2011-2022; Published in Advance August 8, 2025, doi:10.1101/gr.280432.125

  4. Grover, Aakash

    • ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies Genome Res. September 2025 35: 2041-2051; Published in Advance August 7, 2025, doi:10.1101/gr.280586.125

  5. Guardia, Gabriela D.A.

    • Alternative splicing generates HER2 isoform diversity underlying antibody–drug conjugate resistance in breast cancer Genome Res. September 2025 35: 1942-1958; Published in Advance July 15, 2025, doi:10.1101/gr.280304.124

H

  1. Hannes, Laurens

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

  2. Hansen, Kasper D.

    • Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks Genome Res. September 2025 35: 2087-2103; Published in Advance July 17, 2025, doi:10.1101/gr.280808.125
      OPEN ACCESS ARTICLE

  3. Hari, Ananth

    • Genotyping of selected germline adaptive immune system loci using short-read sequencing data Genome Res. September 2025 35: 2076-2086; Published in Advance August 5, 2025, doi:10.1101/gr.280314.124
      OPEN ACCESS ARTICLE

  4. Harjanto, Dewi

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

  5. Hedlund, Eva

    • Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations Genome Res. September 2025 35: 1975-1991; Published in Advance July 17, 2025, doi:10.1101/gr.279501.124
      OPEN ACCESS ARTICLE

  6. Hsu, Polly Yingshan

    • The ggRibo single-gene viewer reveals insights into translatome and other nucleotide-resolution omics data Genome Res. September 2025 35: 2130-2142; Published in Advance July 22, 2025, doi:10.1101/gr.280480.125
      OPEN ACCESS ARTICLE

  7. Hu, Mengzhu

  8. Huang, Jieping

    • Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs Genome Res. September 2025 35: 2116-2129; Published in Advance June 16, 2025, doi:10.1101/gr.280095.124

I

  1. Irby, Matthew J.

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

J

  1. Jatsenko, Tatjana

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

K

  1. Kalita, Akash

  2. Kaufman, Isaiah D.

    • The ggRibo single-gene viewer reveals insights into translatome and other nucleotide-resolution omics data Genome Res. September 2025 35: 2130-2142; Published in Advance July 22, 2025, doi:10.1101/gr.280480.125
      OPEN ACCESS ARTICLE

  3. Keener, Rebecca

    • Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks Genome Res. September 2025 35: 2087-2103; Published in Advance July 17, 2025, doi:10.1101/gr.280808.125
      OPEN ACCESS ARTICLE

  4. Kivisild, Toomas

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

  5. Korbie, Darren

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

L

  1. Laprise, Dylan

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

  2. Leboeuf, Melanie

    • Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations Genome Res. September 2025 35: 1975-1991; Published in Advance July 17, 2025, doi:10.1101/gr.279501.124
      OPEN ACCESS ARTICLE

  3. Lenoel, Isadora

    • Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations Genome Res. September 2025 35: 1975-1991; Published in Advance July 17, 2025, doi:10.1101/gr.279501.124
      OPEN ACCESS ARTICLE

  4. Li, Jianbo

    • Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs Genome Res. September 2025 35: 2116-2129; Published in Advance June 16, 2025, doi:10.1101/gr.280095.124

  5. Lilieholm, Marina K.

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

  6. Lin, Erica

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

  7. Little, Jordan H.

    • ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies Genome Res. September 2025 35: 2041-2051; Published in Advance August 7, 2025, doi:10.1101/gr.280586.125

  8. Liu, Zhuang

    • Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs Genome Res. September 2025 35: 2116-2129; Published in Advance June 16, 2025, doi:10.1101/gr.280095.124

  9. Lobsiger, Christian S.

    • Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations Genome Res. September 2025 35: 1975-1991; Published in Advance July 17, 2025, doi:10.1101/gr.279501.124
      OPEN ACCESS ARTICLE

M

  1. Majumdar, Sudeshna

  2. Manhas, Avinchal

  3. Mao, Guangyao

  4. Martin, Caden J.

    • Distinct classes of lamina-associated domains are defined by differential patterns of repressive histone methylation Genome Res. September 2025 35: 1959-1974; Published in Advance August 5, 2025, doi:10.1101/gr.280380.124
      OPEN ACCESS ARTICLE

  5. McVeigh, Terri P.

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

  6. Mei, Irene

    • Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations Genome Res. September 2025 35: 1975-1991; Published in Advance July 17, 2025, doi:10.1101/gr.279501.124
      OPEN ACCESS ARTICLE

  7. Meyer, Guillermo Hoffmann

    • ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies Genome Res. September 2025 35: 2041-2051; Published in Advance August 7, 2025, doi:10.1101/gr.280586.125

  8. Mirabello, Lisa

    • Genotyping of selected germline adaptive immune system loci using short-read sequencing data Genome Res. September 2025 35: 2076-2086; Published in Advance August 5, 2025, doi:10.1101/gr.280314.124
      OPEN ACCESS ARTICLE

  9. Moir-Meyer, Gemma

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

  10. Montalban, Gemma

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

  11. Mudiyanselage, Shachinthaka D. Dissanayaka

    • The paradox of R-loops: guardians of the genome or drivers of disease? Genome Res. September 2025 35: 1919-1928; Published in Advance August 6, 2025, doi:10.1101/gr.278992.124

  12. Muller, Héloïse

    • Phylogenetic relatedness rather than aquatic habitat fosters horizontal transfer of transposable elements in animals Genome Res. September 2025 35: 2011-2022; Published in Advance August 8, 2025, doi:10.1101/gr.280432.125

N

  1. Nagarajan, Prabakaran

    • Distinct classes of lamina-associated domains are defined by differential patterns of repressive histone methylation Genome Res. September 2025 35: 1959-1974; Published in Advance August 5, 2025, doi:10.1101/gr.280380.124
      OPEN ACCESS ARTICLE

  2. Naik, Hemant C.

  3. Naskar, Amlan Jyoti

  4. Nichterwitz, Susanne

    • Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations Genome Res. September 2025 35: 1975-1991; Published in Advance July 17, 2025, doi:10.1101/gr.279501.124
      OPEN ACCESS ARTICLE

  5. Nidharshan, Sundarraj

  6. Nijssen, Jik

    • Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations Genome Res. September 2025 35: 1975-1991; Published in Advance July 17, 2025, doi:10.1101/gr.279501.124
      OPEN ACCESS ARTICLE

  7. Notani, Dimple

  8. Numanagić, Ibrahim

    • Genotyping of selected germline adaptive immune system loci using short-read sequencing data Genome Res. September 2025 35: 2076-2086; Published in Advance August 5, 2025, doi:10.1101/gr.280314.124
      OPEN ACCESS ARTICLE

O

  1. Oser, Elizabeth A.

    • Distinct classes of lamina-associated domains are defined by differential patterns of repressive histone methylation Genome Res. September 2025 35: 1959-1974; Published in Advance August 5, 2025, doi:10.1101/gr.280380.124
      OPEN ACCESS ARTICLE

P

  1. Parsana, Princy

    • Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks Genome Res. September 2025 35: 2087-2103; Published in Advance July 17, 2025, doi:10.1101/gr.280808.125
      OPEN ACCESS ARTICLE

  2. Parsons, Michael T.

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

  3. Partha, Raghavendran

    • ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies Genome Res. September 2025 35: 2041-2051; Published in Advance August 7, 2025, doi:10.1101/gr.280586.125

  4. Parthun, Mark R.

    • Distinct classes of lamina-associated domains are defined by differential patterns of repressive histone methylation Genome Res. September 2025 35: 1959-1974; Published in Advance August 5, 2025, doi:10.1101/gr.280380.124
      OPEN ACCESS ARTICLE

  5. Peccoud, Jean

    • Phylogenetic relatedness rather than aquatic habitat fosters horizontal transfer of transposable elements in animals Genome Res. September 2025 35: 2011-2022; Published in Advance August 8, 2025, doi:10.1101/gr.280432.125

  6. Popova, Liudmila V.

    • Distinct classes of lamina-associated domains are defined by differential patterns of repressive histone methylation Genome Res. September 2025 35: 1959-1974; Published in Advance August 5, 2025, doi:10.1101/gr.280380.124
      OPEN ACCESS ARTICLE

R

  1. Rangel-Pozzo, Aline

    • Alternative splicing generates HER2 isoform diversity underlying antibody–drug conjugate resistance in breast cancer Genome Res. September 2025 35: 1942-1958; Published in Advance July 15, 2025, doi:10.1101/gr.280304.124

  2. Ravichandran, Prashanthi

    • Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks Genome Res. September 2025 35: 2087-2103; Published in Advance July 17, 2025, doi:10.1101/gr.280808.125
      OPEN ACCESS ARTICLE

  3. Repsilber, Dirk

    • Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations Genome Res. September 2025 35: 1975-1991; Published in Advance July 17, 2025, doi:10.1101/gr.279501.124
      OPEN ACCESS ARTICLE

  4. Reyon, Deepak

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

S

  1. Sahinalp, S. Cenk

    • Genotyping of selected germline adaptive immune system loci using short-read sequencing data Genome Res. September 2025 35: 2076-2086; Published in Advance August 5, 2025, doi:10.1101/gr.280314.124
      OPEN ACCESS ARTICLE

  2. Sarma, Kavitha

    • The paradox of R-loops: guardians of the genome or drivers of disease? Genome Res. September 2025 35: 1919-1928; Published in Advance August 6, 2025, doi:10.1101/gr.278992.124

  3. Savisaar, Rosina

    • Phylogenetic relatedness rather than aquatic habitat fosters horizontal transfer of transposable elements in animals Genome Res. September 2025 35: 2011-2022; Published in Advance August 8, 2025, doi:10.1101/gr.280432.125

  4. Shi, Weiyang

  5. Shukla, Harsh G.

    • Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome Genome Res. September 2025 35: 2023-2040; Published in Advance July 16, 2025, doi:10.1101/gr.280728.125
      OPEN ACCESS ARTICLE

  6. Smith, Martin

    • ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies Genome Res. September 2025 35: 2041-2051; Published in Advance August 7, 2025, doi:10.1101/gr.280586.125

  7. Spurdle, Amanda B.

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

  8. Stanton, Benjamin Z.

    • Distinct classes of lamina-associated domains are defined by differential patterns of repressive histone methylation Genome Res. September 2025 35: 1959-1974; Published in Advance August 5, 2025, doi:10.1101/gr.280380.124
      OPEN ACCESS ARTICLE

  9. Stewart-Ornstein, Jacob

    • 3′-end ligation sequencing is a sensitive method to detect DNA nicks at potential sites of off-target activity induced by prime editors Genome Res. September 2025 35: 2064-2075; Published in Advance August 5, 2025, doi:10.1101/gr.280164.124
      OPEN ACCESS ARTICLE

  10. Sunkel, Benjamin D.

    • Distinct classes of lamina-associated domains are defined by differential patterns of repressive histone methylation Genome Res. September 2025 35: 1959-1974; Published in Advance August 5, 2025, doi:10.1101/gr.280380.124
      OPEN ACCESS ARTICLE

T

  1. Thienpont, Bernard

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

  2. Trau, Matt

    • The SeqSplice multiplexed minigene splicing assay for characterization and quantitation of variant-induced BRCA1 and BRCA2 splice isoforms Genome Res. September 2025 35: 2104-2115; Published in Advance August 6, 2025, doi:10.1101/gr.279557.124

V

  1. Van Damme, Philip

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

  2. Vermeesch, Joris Robert

    • Genotype imputation from low-coverage data for medical and population genetic analyses Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
      OPEN ACCESS ARTICLE

W

  1. Wang, Zhen

    • Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs Genome Res. September 2025 35: 2116-2129; Published in Advance June 16, 2025, doi:10.1101/gr.280095.124

  2. Wen, Qiuhan

    • Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs Genome Res. September 2025 35: 2116-2129; Published in Advance June 16, 2025, doi:10.1101/gr.280095.124

  3. Wu, Hsin-Yen Larry

    • The ggRibo single-gene viewer reveals insights into translatome and other nucleotide-resolution omics data Genome Res. September 2025 35: 2130-2142; Published in Advance July 22, 2025, doi:10.1101/gr.280480.125
      OPEN ACCESS ARTICLE

  4. Wulfridge, Phillip

    • The paradox of R-loops: guardians of the genome or drivers of disease? Genome Res. September 2025 35: 1919-1928; Published in Advance August 6, 2025, doi:10.1101/gr.278992.124

Y

  1. Yeager, Meredith

    • Genotyping of selected germline adaptive immune system loci using short-read sequencing data Genome Res. September 2025 35: 2076-2086; Published in Advance August 5, 2025, doi:10.1101/gr.280314.124
      OPEN ACCESS ARTICLE

  2. Yi, Guoqiang

    • Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs Genome Res. September 2025 35: 2116-2129; Published in Advance June 16, 2025, doi:10.1101/gr.280095.124

Z

  1. Zhang, Haihan

    • Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs Genome Res. September 2025 35: 2116-2129; Published in Advance June 16, 2025, doi:10.1101/gr.280095.124

  2. Zhou, Wenjian

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