Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding

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Figure 1.
Figure 1.

Experimental overview. Comparative epigenomic analysis of the contribution of TEs to NF-kB gene regulatory networks. Primary aortic endothelial cells from human, mouse, and cow were treated with TNF and subjected to ChIP-seq (RELA, H3K4me2, and H3K27ac), ATAC-seq, and RNA-seq. H3K4me3 HiChIP, ChRO-seq, and CRISPR-Cas9 deletions of an exemplar TE-derived region were performed in TeloHAEC. Created in BioRender (https://www.biorender.com).

This Article

  1. Genome Res. 35: 1544-1559

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