Table 1.
Summary of NORG content in assemblies of Oryza genus
| Species and variety | Subpopulationa | Genome size (Mb) | NORG length (kb) | Proportion to nuclear genome | NUPT length (kb)b | NUMT length (kb)b | Nuclear genome info | Genome type |
|---|---|---|---|---|---|---|---|---|
| O. sativa (Asian cultivated rice) |
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| N22 | cA | 382.954 | 1011.926 | 0.26% | 536 (51%) | 510 (49%) | OsN22RS2 | AA |
| NATEL BORO | cA2 | 383.721 | 868.398 | 0.23% | 474 (55%) | 394 (45%) | Os127652RS1 | AA |
| ARC 10497 | cB | 378.464 | 818.082 | 0.22% | 523 (64%) | 296 (36%) | Os117425RS1 | AA |
| CHAO MEO | GJ-subtrp | 376.857 | 1574.855 | 0.42% | 780 (50%) | 796 (50%) | Os132278RS1 | AA |
| Nipponbare | GJ-temp | 373.246 | 1401.968 | 0.38% | 836 (58%) | 598 (42%) | IRGSP-1.0 | AA |
| Azucena | GJ-trop1 | 379.628 | 1105.439 | 0.29% | 728 (66%) | 378 (34%) | AzucenaRS1 | AA |
| KETAN NANGKA | GJ-trop2 | 380.759 | 864.677 | 0.23% | 529 (61%) | 337 (39%) | Os128077RS1 | AA |
| Zhenshan97 | XI-1A | 387.326 | 920.786 | 0.24% | 496 (52%) | 460 (48%) | ZS97RS3 | AA |
| IR 64 | XI-1B1 | 386.699 | 763.879 | 0.20% | 391 (51%) | 374 (49%) | OsIR64RS1 | AA |
| PR 106 | XI-1B2 | 391.176 | 951.257 | 0.24% | 419 (44%) | 537 (56%) | Os127742RS1 | AA |
| GOBOL SAIL | XI-2A | 391.773 | 855.828 | 0.22% | 360 (42%) | 494 (58%) | Os132424RS1 | AA |
| LARHA MUGAD | XI-2B | 390.196 | 828.319 | 0.21% | 377 (46%) | 450 (54%) | Os125619RS1 | AA |
| LIMA | XI-3A | 392.625 | 932.976 | 0.24% | 366 (39%) | 566 (61%) | Os127564RS1 | AA |
| KHAO YAI GUANG | XI-3B1 | 393.738 | 938.22 | 0.24% | 351 (38%) | 586 (62%) | Os127518RS1 | AA |
| LIU XU | XI-3B2 | 392.033 | 932.67 | 0.24% | 475 (51%) | 458 (49%) | Os125827RS1 | AA |
| Minghui63 | XI-adm | 387.424 | 845.852 | 0.22% | 372 (41%) | 530 (59%) | MH63RS3 | AA |
| O. glaberrima (African cultivated rice) | 344.458 | 948.328 | 0.28% | 330 (33%) | 660 (67%) | OglaRS2 | AA | |
| O. barthii | 344.915 | 1200.189 | 0.35% | 313 (25%) | 932 (75%) | ObarRS3 | AA | |
| O. glumaepatula | 386.181 | 1144.465 | 0.30% | 841 (71%) | 336 (29%) | OgluRS3 | AA | |
| O. meridionalis | 379.256 | 1171.963 | 0.31% | 561 (46%) | 657 (54%) | OmerRS3 | AA | |
| O. punctata | 419.078 | 698.815 | 0.17% | 297 (40%) | 449 (60%) | OpunRS2 | BB | |
| O. brachyantha | 258.904 | 301.256 | 0.12% | 138 (43%) | 180 (57%) | ObraRS2 | FF |
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aSubpopulations are as follows: (cA) circum-Aus; (cB) circum-Basmati; (GJ) Geng-japonica, for which (trop) tropical, (subtrp) subtropical, and (temp) temperate; and (XI) Xian-indica.
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bBecause of the overlap of some NUMTs and NUPTs and interference from mitochondrial ptDNA, the total length of NUPTs and NUMTs may exceed that of NORGs.
