Statistical results of centromere alignment on the X Chromosome for CHM13 and CHM1. (A) Comparison of the number of short and long indels, as well as insertions and deletions, in the alignment results of the two methods. (B) Comparison of the distribution of short indels (≤5 bp) by length in the alignment results of the two methods. (C) Comparison of the number of long indels and HOR-indels in RaMA alignment results, reliable regions of RaMA based on the rare match and the UniAligner alignment results. (D) Distribution of the multiplicity of HOR indels in RaMA alignment results, reliable regions of RaMA based on the rare match, and the UniAligner alignment results.
