Table 3.
Assembly score results for nine different data sets of synthetic HiFi reads with coverage 30×, based on a repetitive region with a variable-length (up to ±5% per copy) repeat unit of length {15, 20, 25} kb, and P = {1/250, 1/500, 1/1000}
| Synthetic data set | Assembly score | ||||||
|---|---|---|---|---|---|---|---|
| Repeat unit size (kb) | Number of copies | P | RAmbler | hifiasm | LJA | HiCANU | Verkko |
| 15 | 5 | 1/250 | 0.493 | 0.357 | 0.327 | 0.239 | 0.251 |
| 1/500 | 0.993 | 0.545 | 0.658 | 0.165 | 0.204 | ||
| 1/1000 | 0.454 | 0.426 | 0.346 | 0.547 | 0.408 | ||
| 20 | 1/250 | 0.422 | 0.599 | 0.418 | 0.441 | 0.276 | |
| 1/500 | 0.797 | 0.309 | 0.618 | 0.312 | 0.246 | ||
| 1/1000 | 0.896 | 0.213 | 0.395 | 0.206 | 0.294 | ||
| 25 | 1/250 | 0.637 | 0.486 | 0.636 | 0.227 | 0.354 | |
| 1/500 | 0.773 | 0.173 | 0.970 | 0.254 | 0.471 | ||
| 1/1000 | 0.465 | 0.231 | 0.409 | 0.278 | 0.345 | ||
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Numbers in bold indicate the best assembly score on each row.
