Comparing RAmbler's assemblies (RA.HG38.HG002, RA.HG38.HG00733, and RA.HG38.HG01346) for selected regions of human Chromosomes 19, 8, and X against the GRCh38.p13 assembly (HG38) using CRAQ
| Chromosome | Metric | HG002 | HG00733 | HG01346 | |||
|---|---|---|---|---|---|---|---|
| HG38 | RA.HG38.HG002 | HG38 | RA.HG38.HG00733 | HG38 | RA.HG38.HG01346 | ||
| 19 | Coverage (%) | 90.57 | 94.25 | 89.95 | 94.16 | 90.32 | 94.05 |
| R-AQI | 77.33 | 78.03 | 75.96 | 76.45 | 67.66 | 68.92 | |
| S-AQI | 81.29 | 82.12 | 92.69 | 89.81 | 89.29 | 91.41 | |
| 8 | Coverage (%) | 92.96 | 98.19 | 92.47 | 97.34 | 92.41 | 97.72 |
| R-AQI | 82.11 | 83.79 | 80.90 | 83.81 | 79.16 | 79.22 | |
| S-AQI | 89.48 | 92.60 | 94.21 | 96.54 | 98.52 | 98.60 | |
| X | Coverage (%) | 94.02 | 98.31 | 93.91 | 97.95 | 94.06 | 97.71 |
| R-AQI | 81.52 | 81.76 | 86.66 | 86.17 | 83.60 | 82.85 | |
| S-AQI | 92.15 | 93.66 | 94.69 | 94.86 | 96.32 | 97.42 | |
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CRAQ reports the assembly coverage rate (i.e., the fraction of the genome assembled), the regional assembly quality index (R-AQI) score (higher is better), and the structural assembly quality index (S-AQI) score (higher is better); CRAQ was provided Illumina reads (∼13.5× coverage) and long PacBio HiFi reads (∼66× coverage) for HG002; Illumina reads (∼12× coverage) and long PacBio HiFi reads (∼33× coverage) for HG00733; Illumina reads (∼10× coverage) and long PacBio HiFi reads (∼26× coverage) for HG01346. Numbers in bold indicate the best scores.
