RAmbler resolves complex repeats in human Chromosomes 8, 19, and X

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Figure 2.
Figure 2.

Assembly statistics for RAmbler, hifiasm, LJA, HiCANU, and Verkko for 36 different combinations of synthetic data with repetitive regions having repeat sizes {15, 20} kb, number of copies {5, 10}, mutation rate P = {1/250, 1/500, 1/1000}, and coverage depth {20× , 30× , 40× }. (A) Number of contigs, (B) effective genome fraction per contig ζ, (C) normalized NG50 η, and (D) assembly score.

This Article

  1. Published in Advance March 4, 2025, doi: 10.1101/gr.279308.124 Genome Res. 35: 863-876

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