Multisample motif discovery and visualization for tandem repeats

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Figure 4.
Figure 4.

Motif characterization of the RFC1 repeats in three HPRC genomes. The results from MotifScope on the assemblies of three genomes, (A) HG01175, (B) HG01109, and (C) HG00733. These three genomes are Admixed Americans. (D) The joint analysis result of these three genomes. The sequence “GACGG” in these sequences is highlighted in red boxes. The left panel shows the clustering of sequences along with genome identifiers, represented by the corresponding color bar on the second-to-right side. The right panel shows the motif composition of the repeat, with distinct motifs represented in different colors, as indicated by the color bar on the right side of the figure.

This Article

  1. Genome Res. 35: 850-862

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