A low-abundance class of Dicer-dependent siRNAs produced from a variety of features in C. elegans

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Figure 5.
Figure 5.

Competition between Argonautes for 23H-RNAs. (A,B) RPM-normalized reads corresponding to 23H-RNAs, miRNAs, and piRNAs from GFP::ALG-1 (A) or GFP::ALG-2 (B) co-IP and corresponding cell lysate sRNA-seq libraries. Two-sample t-tests were used to calculate the P-values. Bonferroni corrections were applied to account for multiple comparisons. Libraries from gravid adults treated with control (L4440) or rde-1 RNAi. Error bars are SD between two biological replicates. (C,D) RPM-normalized rde-1-matching reads from GFP::ALG-1 (C) or GFP::ALG-2 (D) co-IP and corresponding cell lysate sRNA-seq libraries.

This Article

  1. Genome Res. 34: 2203-2216

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