Table 2.
Edited read metrics after chimeric artifact processing
| Sample | Total edited reads | Mean edited read length | Average edited reads per MHC-specific read |
|---|---|---|---|
| PGF + COX | 176,999 | 4058 | 2.15 |
| EAS-F | 249,308 | 3257 | 2.56 |
| EAS-M | 257,299 | 3500 | 2.31 |
| EAS-P | 251,177 | 3541 | 2.14 |
| AFA | 222,099 | 4298 | 2.28 |
| EUR-F | 476,493 | 2853 | 2.45 |
| EUR-M | 402,635 | 3007 | 2.46 |
| EUR-P | 499,196 | 2816 | 2.67 |
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Total number of MHC-specific reads after “Editing by Alignment” and their mean length. This set of reads is used for the haplotype-resolved assembly. Chimeric artifact processing can generate multiple edited reads for each MHC-specific read (average edited reads per MHC-specific read).
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(EAS-F) East-Asian father, (EAS-M) East-Asian mother, (EUR-F) European father, (EUR-M) European mother.
