Minimal positional substring cover is a haplotype threading alternative to Li and Stephens model

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Figure 5.
Figure 5.

Frequency by panel size of the number of segments in British-only haplotype threading of haplotypes in the UKB . Haplotype threading is generated with a reference panel random subset of the British-only haplotypes in the UKB. Plotted by panel size for M ∈ {1000, 10,000, 100,000, 860,022}. Note that frequencies exclude haplotypes for which no threading was found.

This Article

  1. Published in Advance June 14, 2023, doi: 10.1101/gr.277673.123 Genome Res. 33: 1007-1014

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