Volume 31, Issue 8 | August 2021

Research
- - Characterizing nucleotide variation and expansion dynamics in human-specific variable number tandem repeats
    Meredith M. Course
    Arvis Sulovari
    Kathryn Gudsnuk
    Evan E. Eichler
    Paul N. Valdmanis
    First Published July 9, 2021
  - Enhancers with tissue-specific activity are enriched in intronic regions
    Beatrice Borsari
    Pablo Villegas-Mirón
    Sílvia Pérez-Lluch
    Isabel Turpin
    Hafid Laayouni
    Alba Segarra-Casas
    Jaume Bertranpetit
    Roderic Guigó
    Sandra Acosta
    First Published July 21, 2021
  - Large palindromes on the primate X Chromosome are preserved by natural selection
    Jackson Emily K.
    Bellott Daniel W.
    Cho Ting-Jan
    Skaletsky Helen
    Hughes Jennifer F.
    Pyntikova Tatyana
    Page David C.
    First Published July 21, 2021
  - Genomic architecture constrained placental mammal X Chromosome evolution
    Wesley A. Brashear
    Kevin R. Bredemeyer
    William J. Murphy
    First Published July 22, 2021
  - Allelic diversification after transposable element exaptation promoted gsdf as the master sex determining gene of sablefish
    Amaury Herpin
    Manfred Schartl
    Alexandra Depincé
    Yann Guiguen
    Julien Bobe
    Aurélie Hua-Van Edward S. Hayman Anna Octavera
    ...[+3 authors]...,
    Goro Yoshizaki
    Krista M. Nichols
    Giles W. Goetz
    J. Adam Luckenbach
    First Published June 28, 2021
  - Hydroxycarbamide effects on DNA methylation and gene expression in myeloproliferative neoplasms
    Stephania Contreras Castillo
    Bertille Montibus
    Azucena Rocha
    Will Duke
    Ferdinand von Meyenn
    Donal McLornan
    ...[+1 authors]...,
    Claire Harrison
    Ann Mullally
    Reiner Schulz
    Rebecca J. Oakey
    First Published July 9, 2021
  - Acute depletion of METTL3 implicates N6-methyladenosine in alternative intron/exon inclusion in the nascent transcriptome
    Guifeng Wei
    Mafalda Almeida
    Greta Pintacuda
    Heather Coker
    Joseph S. Bowness
    Jernej Ule
    Neil Brockdorff
    First Published June 15, 2021
  - Genome-wide mapping reveals R-loops associated with centromeric repeats in maize
    Yang Liu
    Qian Liu
    Handong Su
    Kunpeng Liu
    Xue Xiao
    Wei Li
    Qianwen Sun
    James A. Birchler
    Fangpu Han
    First Published July 9, 2021
  - Evolution and genomic signatures of spontaneous somatic mutation in Drosophila intestinal stem cells
    Nick Riddiford
    Katarzyna Siudeja
    Marius van den Beek
    Benjamin Boumard
    Allison J. Bardin
    First Published June 24, 2021
  - Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment
    Morteza Roodgar
    Benjamin H. Good
    Nandita R. Garud
    Stephen Martis
    Mohan Avula
    Wenyu Zhou Samuel M. Lancaster Hayan Lee
    ...[+3 authors]...,
    Afshin Babveyh
    Sophia Nesamoney
    Katherine S. Pollard
    Michael P. Snyder
    First Published July 22, 2021
Methods
- - Three-dimensional missense tolerance ratio analysis
    Riley E. Perszyk
    Anders S. Kristensen
    Polina Lyuboslavsky
    Stephen F. Traynelis
    First Published July 22, 2021
  - Assessing conservation of alternative splicing with evolutionary splicing graphs
    Diego Javier Zea
    Sofya Laskina
    Alexis Baudin
    Hugues Richard
    Elodie Laine
    First Published June 15, 2021
Resources
- - Small RNA expression and miRNA modification dynamics in human oocytes and early embryos
    Pauliina Paloviita
    Christel Hydén-Granskog
    Dawit A. Yohannes
    Priit Paluoja
    Juha Kere
    Juha S. Tapanainen
    ...[+1 authors]...,
    Kaarel Krjutškov
    Timo Tuuri
    Urmo Võsa
    Sanna Vuoristo
    First Published August 2, 2021
  - Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish
    Alice S. Naftaly
    Shana Pau
    Michael A. White
    First Published June 15, 2021
  - Transcriptional milestones in Dictyostelium development
    Mariko Katoh-Kurasawa
    Karin Hrovatin
    Shigenori Hirose
    Amanda Webb
    Hsing-I Ho
    Blaž Zupan
    Gad Shaulsky
    First Published June 28, 2021

Table of Contents

Volume 31, Issue 8 | August 2021

Research

Characterizing nucleotide variation and expansion dynamics in human-specific variable number tandem repeats

Enhancers with tissue-specific activity are enriched in intronic regions

Large palindromes on the primate X Chromosome are preserved by natural selection

Genomic architecture constrained placental mammal X Chromosome evolution

Allelic diversification after transposable element exaptation promoted gsdf as the master sex determining gene of sablefish

Hydroxycarbamide effects on DNA methylation and gene expression in myeloproliferative neoplasms

Acute depletion of METTL3 implicates N6-methyladenosine in alternative intron/exon inclusion in the nascent transcriptome

Genome-wide mapping reveals R-loops associated with centromeric repeats in maize

Evolution and genomic signatures of spontaneous somatic mutation in Drosophila intestinal stem cells

Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

Methods

Three-dimensional missense tolerance ratio analysis

Assessing conservation of alternative splicing with evolutionary splicing graphs

Resources

Small RNA expression and miRNA modification dynamics in human oocytes and early embryos

Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish

Transcriptional milestones in Dictyostelium development

Table of Contents

Volume 31, Issue 8 | August 2021

Share this issue

Research

Methods

Resources