Table of Contents

August 2020; 30 (8)

Research

  • LCM-seq reveals unique transcriptional adaptation mechanisms of resistant neurons and identifies protective pathways in spinal muscular atrophy

    • Susanne Nichterwitz,
    • Jik Nijssen,
    • Helena Storvall,
    • Christoph Schweingruber,
    • Laura Helen Comley,
    • Ilary Allodi,
    • Mirjam van der Lee,
    • Qiaolin Deng,
    • Rickard Sandberg,
    • and Eva Hedlund
    Genome Res. August 2020 30: 1083-1096; Published in Advance August 20, 2020, doi:10.1101/gr.265017.120
    OPEN ACCESS ARTICLE

  • Diploid genome architecture revealed by multi-omic data of hybrid mice

    • Zhijun Han,
    • Kairong Cui,
    • Katarzyna Placek,
    • Ni Hong,
    • Chengqi Lin,
    • Wei Chen,
    • Keji Zhao,
    • and Wenfei Jin
    Genome Res. August 2020 30: 1097-1106; Published in Advance August 5, 2020, doi:10.1101/gr.257568.119

  • ADAR-deficiency perturbs the global splicing landscape in mouse tissues

    • Utkarsh Kapoor,
    • Konstantin Licht,
    • Fabian Amman,
    • Tobias Jakobi,
    • David Martin,
    • Christoph Dieterich,
    • and Michael F. Jantsch
    Genome Res. August 2020 30: 1107-1118; Published in Advance July 29, 2020, doi:10.1101/gr.256933.119
    OPEN ACCESS ARTICLE

  • PR-DUB maintains the expression of critical genes through FOXK1/2- and ASXL1/2/3-dependent recruitment to chromatin and H2AK119ub1 deubiquitination

    • Petros Kolovos,
    • Koutarou Nishimura,
    • Aditya Sankar,
    • Simone Sidoli,
    • Paul A. Cloos,
    • Kristian Helin,
    • and Jesper Christensen
    Genome Res. August 2020 30: 1119-1130; Published in Advance August 3, 2020, doi:10.1101/gr.261016.120

  • Xylem systems genetics analysis reveals a key regulator of lignin biosynthesis in Populus deltoides

    • Kelly M. Balmant,
    • Jerald D. Noble,
    • Filipe C. Alves,
    • Christopher Dervinis,
    • Daniel Conde,
    • Henry W. Schmidt,
    • Ana I. Vazquez,
    • William B. Barbazuk,
    • Gustavo de los Campos,
    • Marcio F.R. Resende, Jr.,
    • and Matias Kirst
    Genome Res. August 2020 30: 1131-1143; Published in Advance August 19, 2020, doi:10.1101/gr.261438.120

Methods

  • Detection and characterization of jagged ends of double-stranded DNA in plasma

    • Peiyong Jiang,
    • Tingting Xie,
    • Spencer C. Ding,
    • Ze Zhou,
    • Suk Hang Cheng,
    • Rebecca W.Y. Chan,
    • Wing-Shan Lee,
    • Wenlei Peng,
    • John Wong,
    • Vincent W.S. Wong,
    • Henry L.Y. Chan,
    • Stephen L. Chan,
    • Liona C.Y. Poon,
    • Tak Y. Leung,
    • K.C. Allen Chan,
    • Rossa W.K. Chiu,
    • and Y.M. Dennis Lo
    Genome Res. August 2020 30: 1144-1153; Published in Advance August 14, 2020, doi:10.1101/gr.261396.120
    OPEN ACCESS ARTICLE

  • Detection of simple and complex de novo mutations with multiple reference sequences

    • Kiran V. Garimella,
    • Zamin Iqbal,
    • Michael A. Krause,
    • Susana Campino,
    • Mihir Kekre,
    • Eleanor Drury,
    • Dominic Kwiatkowski,
    • Juliana M. Sá,
    • Thomas E. Wellems,
    • and Gil McVean
    Genome Res. August 2020 30: 1154-1169; Published in Advance August 19, 2020, doi:10.1101/gr.255505.119
    OPEN ACCESS ARTICLE

  • A pedigree-based prediction model identifies carriers of deleterious de novo mutations in families with Li-Fraumeni syndrome

    • Fan Gao,
    • Xuedong Pan,
    • Elissa B. Dodd-Eaton,
    • Carlos Vera Recio,
    • Matthew D. Montierth,
    • Jasmina Bojadzieva,
    • Phuong L. Mai,
    • Kristin Zelley,
    • Valen E. Johnson,
    • Danielle Braun,
    • Kim E. Nichols,
    • Judy E. Garber,
    • Sharon A. Savage,
    • Louise C. Strong,
    • and Wenyi Wang
    Genome Res. August 2020 30: 1170-1180; Published in Advance August 18, 2020, doi:10.1101/gr.249599.119
    OPEN ACCESS ARTICLE

  • TransBorrow: genome-guided transcriptome assembly by borrowing assemblies from different assemblers

    • Ting Yu,
    • Zengchao Mu,
    • Zhaoyuan Fang,
    • Xiaoping Liu,
    • Xin Gao,
    • and Juntao Liu
    Genome Res. August 2020 30: 1181-1190; Published in Advance August 17, 2020, doi:10.1101/gr.257766.119
    OPEN ACCESS ARTICLE

  • RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

    • Ka Ming Nip,
    • Readman Chiu,
    • Chen Yang,
    • Justin Chu,
    • Hamid Mohamadi,
    • René L. Warren,
    • and Inanc Birol
    Genome Res. August 2020 30: 1191-1200; Published in Advance August 17, 2020, doi:10.1101/gr.260174.119
    OPEN ACCESS ARTICLE

  • SNP-based quantitative deconvolution of biological mixtures: application to the detection of cows with subclinical mastitis by whole-genome sequencing of tank milk

    • Wouter Coppieters,
    • Latifa Karim,
    • and Michel Georges
    Genome Res. August 2020 30: 1201-1207; Published in Advance June 26, 2020, doi:10.1101/gr.256172.119

Resource

  • LEMMI: a continuous benchmarking platform for metagenomics classifiers

    • Mathieu Seppey,
    • Mosè Manni,
    • and Evgeny M. Zdobnov
    Genome Res. August 2020 30: 1208-1216; Published in Advance July 2, 2020, doi:10.1101/gr.260398.119
    OPEN ACCESS ARTICLE
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This Issue

August 2020; 30 (8)
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  1. Research
  2. Methods
  3. Resource

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