Volume 30, Issue 6 | June 2020

Research
- - Characterization of colibactin-associated mutational signature in an Asian oral squamous cell carcinoma and in other mucosal tumor types
    Arnoud Boot
    Alvin W.T. Ng
    Fui Teen Chong
    Szu-Chi Ho
    Willie Yu
    First Published July 6, 2020
  - Single-cell analysis of human embryos reveals diverse patterns of aneuploidy and mosaicism
    Margaret R. Starostik
    Olukayode A. Sosina
    Rajiv C. McCoy
    First Published July 8, 2020
  - Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability
    Richard J. Wang
    Gregg W.C. Thomas
    Muthuswamy Raveendran
    R. Alan Harris
    Harshavardhan Doddapaneni
    Donna M. Muzny
    ...[+1 authors]...,
    John P. Capitanio
    Predrag Radivojac
    Jeffrey Rogers
    Matthew W. Hahn
    First Published May 27, 2020
  - Coexpression enrichment analysis at the single-cell level reveals convergent defects in neural progenitor cells and their cell-type transitions in neurodevelopmental disorders
    Kaifang Pang
    Li Wang
    Wei Wang
    Jian Zhou
    Chao Cheng
    First Published June 18, 2020
  - Untangling the effects of cellular composition on coexpression analysis
    Marjan Farahbod
    Paul Pavlidis
    First Published June 24, 2020
  - Quantitative analysis of Y-Chromosome gene expression across 36 human tissues
    Alexander K. Godfrey
    Sahin Naqvi
    Lukáš Chmátal
    Joel M. Chick
    Richard N. Mitchell
    First Published May 27, 2020
  - The evolution of sex-biased gene expression in the Drosophila brain
    Samuel Khodursky
    Nicolas Svetec
    Sylvia M. Durkin
    Li Zhao
    First Published June 18, 2020
Methods
- - A long-read RNA-seq approach to identify novel transcripts of very large genes
    Prech Uapinyoying
    Jeremy Goecks
    Susan M. Knoblach
    Karuna Panchapakesan
    Carsten G. Bonnemann
    First Published July 6, 2020
  - Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information
    Zhoutao Chen
    Long Pham
    Tsai-Chin Wu
    Guoya Mo
    Yu Xia
    Peter L. Chang Devin Porter Tan Phan Huu Che Hao Tran Vikas Bansal Justin Shaffer Pedro Belda-Ferre Greg Humphrey Rob Knight
    ...[+10 authors]...,
    Pavel Pevzner
    Son Pham
    Yong Wang
    Ming Lei
    First Published June 15, 2020
  - Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq
    Robert A. Policastro
    R. Taylor Raborn
    Volker P. Brendel
    Gabriel E. Zentner
    First Published July 6, 2020
Resource
- - Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis
    Yingshu Li
    Yongjie Liu
    Hang Yang
    Ting Zhang
    Kiyoshi Naruse
    First Published June 26, 2020
Corrigenda
- - Corrigendum: Human auditory ossicles as an alternative optimal source of ancient DNA
    Kendra Sirak
    Daniel Fernandes
    Olivia Cheronet
    Eadaoin Harney
    Matthew Mah
    Swapan Mallick Nadin Rohland Nicole Adamski Nasreen Broomandkhoshbacht Kimberly Callan Francesca Candilio Ann Marie Lawson Kirsten Mandl Jonas Oppenheimer Kristin Stewardson Fatma Zalzala Alexandra Anders Juraj Bartík Alfredo Coppa Tumen Dashtseveg Sándor Évinger Zdeněk Farkaš Tamás Hajdu Jamsranjav Bayarsaikhan Lauren McIntyre Vyacheslav Moiseyev Mercedes Okumura Ildikó Pap Michael Pietrusewsky Pál Raczky Alena Šefčáková Andrei Soficaru Tamás Szeniczey Béla Miklós Szőke Dennis Van Gerven
    ...[+30 authors]...,
    Sergey Vasilyev
    Lynne Bell
    David Reich
    Ron Pinhasi
    First Published July 14, 2020
  - Corrigendum: OMA standalone: orthology inference among public and custom genomes and transcriptomes
    Adrian M. Altenhoff
    Jeremy Levy
    Magdalena Zarowiecki
    Bartłomiej Tomiczek
    Alex Warwick Vesztrocy
    Daniel A. Dalquen Steven Müller
    ...[+2 authors]...,
    Maximilian J. Telford
    Natasha M. Glover
    David Dylus
    Christophe Dessimoz
    First Published July 14, 2020

Table of Contents

Volume 30, Issue 6 | June 2020

Research

Characterization of colibactin-associated mutational signature in an Asian oral squamous cell carcinoma and in other mucosal tumor types

Single-cell analysis of human embryos reveals diverse patterns of aneuploidy and mosaicism

Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability

Coexpression enrichment analysis at the single-cell level reveals convergent defects in neural progenitor cells and their cell-type transitions in neurodevelopmental disorders

Untangling the effects of cellular composition on coexpression analysis

Quantitative analysis of Y-Chromosome gene expression across 36 human tissues

The evolution of sex-biased gene expression in the Drosophila brain

Methods

A long-read RNA-seq approach to identify novel transcripts of very large genes

Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information

Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq

Resource

Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis

Corrigenda

Corrigendum: Human auditory ossicles as an alternative optimal source of ancient DNA

Corrigendum: OMA standalone: orthology inference among public and custom genomes and transcriptomes

Table of Contents

Volume 30, Issue 6 | June 2020

Share this issue

Research

Methods

Resource

Corrigenda