PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments

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Figure 1.
Figure 1.

1-Step outperforms 2-Step reconstruction methods. (A) Precision and recall of five meta-assembly methods in a benchmark test on target transcripts stratified by their maximum TPMs in the 30 ENCODE RNA-seq data sets: (1) TPM < 1 (413 transcripts); (2) 1 ≤ TPM < 10 (515 transcripts); and (3) TPM ≥ 10 (328 transcripts). (B) Comparison of target transcript GCM1 and predicted models by five meta-assembly methods.

This Article

  1. Published in Advance September 21, 2020, doi: 10.1101/gr.252445.119 Genome Res. 30: 1655-1666

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