Table of Contents

September 2017; 27 (9)

RESEARCH

  • The evolution of duplicate gene expression in mammalian organs

    • Katerina Guschanski,
    • Maria Warnefors,
    • and Henrik Kaessmann
    Genome Res. September 2017 27: 1461-1474; Published in Advance July 25, 2017, doi:10.1101/gr.215566.116

  • Genome-scale mutational signatures of aflatoxin in cells, mice, and human tumors

    • Mi Ni Huang,
    • Willie Yu,
    • Wei Wei Teoh,
    • Maude Ardin,
    • Apinya Jusakul,
    • Alvin Wei Tian Ng,
    • Arnoud Boot,
    • Behnoush Abedi-Ardekani,
    • Stephanie Villar,
    • Swe Swe Myint,
    • Rashidah Othman,
    • Song Ling Poon,
    • Adriana Heguy,
    • Magali Olivier,
    • Monica Hollstein,
    • Patrick Tan,
    • Bin Tean Teh,
    • Kanaga Sabapathy,
    • Jiri Zavadil,
    • and Steven G. Rozen
    Genome Res. September 2017 27: 1475-1486; Published in Advance July 24, 2017, doi:10.1101/gr.220038.116
    OPEN ACCESS ARTICLE

  • Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

    • Myungjin Jo,
    • Ah Young Chung,
    • Nozomu Yachie,
    • Minchul Seo,
    • Hyejin Jeon,
    • Youngpyo Nam,
    • Yeojin Seo,
    • Eunmi Kim,
    • Quan Zhong,
    • Marc Vidal,
    • Hae Chul Park,
    • Frederick P. Roth,
    • and Kyoungho Suk
    Genome Res. September 2017 27: 1487-1500; Published in Advance June 8, 2017, doi:10.1101/gr.211649.116
    OPEN ACCESS ARTICLE

  • HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets

    • Bony De Kumar,
    • Hugo J. Parker,
    • Ariel Paulson,
    • Mark E. Parrish,
    • Irina Pushel,
    • Narendra Pratap Singh,
    • Ying Zhang,
    • Brian D. Slaughter,
    • Jay R. Unruh,
    • Laurence Florens,
    • Julia Zeitlinger,
    • and Robb Krumlauf
    Genome Res. September 2017 27: 1501-1512; Published in Advance August 7, 2017, doi:10.1101/gr.219386.116

  • Recruitment of histone modifications to assist mRNA dosage maintenance after degeneration of cytosine DNA methylation during animal evolution

    • Andrew Ying-Fei Chang and
    • Ben-Yang Liao
    Genome Res. September 2017 27: 1513-1524; Published in Advance July 18, 2017, doi:10.1101/gr.221739.117

  • Trans-splicing enhances translational efficiency in C. elegans

    • Yu-Fei Yang,
    • Xiaoqing Zhang,
    • Xuehua Ma,
    • Taolan Zhao,
    • Qiushi Sun,
    • Qing Huan,
    • Shaohuan Wu,
    • Zhuo Du,
    • and Wenfeng Qian
    Genome Res. September 2017 27: 1525-1535; Published in Advance July 6, 2017, doi:10.1101/gr.202150.115

  • Rapid evolution of female-biased genes among four species of Anopheles malaria mosquitoes

    • Francesco Papa,
    • Nikolai Windbichler,
    • Robert M. Waterhouse,
    • Alessia Cagnetti,
    • Rocco D'Amato,
    • Tania Persampieri,
    • Mara K.N. Lawniczak,
    • Tony Nolan,
    • and Philippos Aris Papathanos
    Genome Res. September 2017 27: 1536-1548; Published in Advance July 26, 2017, doi:10.1101/gr.217216.116
    OPEN ACCESS ARTICLE

  • A genome-wide transcriptome and translatome analysis of Arabidopsis transposons identifies a unique and conserved genome expression strategy for Ty1/Copia retroelements

    • Stefan Oberlin,
    • Alexis Sarazin,
    • Clément Chevalier,
    • Olivier Voinnet,
    • and Arturo Marí-Ordóñez
    Genome Res. September 2017 27: 1549-1562; Published in Advance August 7, 2017, doi:10.1101/gr.220723.117

METHODS

  • Detecting ancient positive selection in humans using extended lineage sorting

    • Stéphane Peyrégne,
    • Michael James Boyle,
    • Michael Dannemann,
    • and Kay Prüfer
    Genome Res. September 2017 27: 1563-1572; Published in Advance July 18, 2017, doi:10.1101/gr.219493.116
    OPEN ACCESS ARTICLE

  • HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology

    • Raunak Shrestha,
    • Ermin Hodzic,
    • Thomas Sauerwald,
    • Phuong Dao,
    • Kendric Wang,
    • Jake Yeung,
    • Shawn Anderson,
    • Fabio Vandin,
    • Gholamreza Haffari,
    • Colin C. Collins,
    • and S. Cenk Sahinalp
    Genome Res. September 2017 27: 1573-1588; Published in Advance July 18, 2017, doi:10.1101/gr.221218.117

  • Statistically robust methylation calling for whole-transcriptome bisulfite sequencing reveals distinct methylation patterns for mouse RNAs

    • Carine Legrand,
    • Francesca Tuorto,
    • Mark Hartmann,
    • Reinhard Liebers,
    • Dominik Jacob,
    • Mark Helm,
    • and Frank Lyko
    Genome Res. September 2017 27: 1589-1596; Published in Advance July 6, 2017, doi:10.1101/gr.210666.116
    OPEN ACCESS ARTICLE

RESOURCES

  • Assembly and analysis of 100 full MHC haplotypes from the Danish population

    • Jacob M. Jensen,
    • Palle Villesen,
    • Rune M. Friborg,
    • The Danish Pan-Genome Consortium,
    • Thomas Mailund,
    • Søren Besenbacher,
    • and Mikkel H. Schierup
    Genome Res. September 2017 27: 1597-1607; Published in Advance August 3, 2017, doi:10.1101/gr.218891.116
    OPEN ACCESS ARTICLE

  • Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain

    • Siling Liu,
    • Zhengbo Wang,
    • Dong Chen,
    • Bowen Zhang,
    • Ren-Rong Tian,
    • Jing Wu,
    • Ying Zhang,
    • Kaiyu Xu,
    • Liu-Meng Yang,
    • Chao Cheng,
    • Jian Ma,
    • Longbao Lv,
    • Yong-Tang Zheng,
    • Xintian Hu,
    • Yi Zhang,
    • Xiangting Wang,
    • and Jiali Li
    Genome Res. September 2017 27: 1608-1620; Published in Advance July 7, 2017, doi:10.1101/gr.217463.116
    OPEN ACCESS ARTICLE

CORRIGENDA

  • Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

    • Mario Ventura,
    • Claudia R. Catacchio,
    • Saba Sajjadian,
    • Laura Vives,
    • Peter H. Sudmant,
    • Tomas Marques-Bonet,
    • Tina A. Graves,
    • Richard K. Wilson,
    • and Evan E. Eichler
    Genome Res. September 2017 27: 1621.1; doi:10.1101/gr.226878.117
    OPEN ACCESS ARTICLE

  • Corrigendum: Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos

    • Xinyi Wang,
    • Denghui Liu,
    • Dajian He,
    • Shengbao Suo,
    • Xian Xia,
    • Xiechao He,
    • Jing-Dong J. Han,
    • and Ping Zheng
    Genome Res. September 2017 27: 1621.2; doi:10.1101/gr.226613.117
    OPEN ACCESS ARTICLE

  • Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

    • Sandra Reuter,
    • M. Estée Török,
    • Matthew T.G. Holden,
    • Rosy Reynolds,
    • Kathy E. Raven,
    • Beth Blane,
    • Tjibbe Donker,
    • Stephen D. Bentley,
    • David M. Aanensen,
    • Hajo Grundmann,
    • Edward J. Feil,
    • Brian G. Spratt,
    • Julian Parkhill,
    • and Sharon J. Peacock
    Genome Res. September 2017 27: 1622; doi:10.1101/gr.228155.117
    OPEN ACCESS ARTICLE
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This Issue

September 2017; 27 (9)
Cover
  1. RESEARCH
  2. METHODS
  3. RESOURCES
  4. CORRIGENDA

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