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  Characteristics of de novo structural changes in the human genome

  • Wigard P. Kloosterman,
  • Laurent C. Francioli,
  • Fereydoun Hormozdiari,
  • Tobias Marschall,
  • Jayne Y. Hehir-Kwa,
  • Abdel Abdellaoui,
  • Eric-Wubbo Lameijer,
  • Matthijs H. Moed,
  • Vyacheslav Koval,
  • Ivo Renkens,
  • Markus J. van Roosmalen,
  • Pascal Arp,
  • Lennart C. Karssen,
  • Bradley P. Coe,
  • Robert E. Handsaker,
  • Eka D. Suchiman,
  • Edwin Cuppen,
  • Djie Tjwan Thung,
  • Mitch McVey,
  • Michael C. Wendl,
  • Genome of the Netherlands Consortium,
  • André Uitterlinden,
  • Cornelia M. van Duijn,
  • Morris A. Swertz,
  • Cisca Wijmenga,
  • GertJan B. van Ommen,
  • P. Eline Slagboom,
  • Dorret I. Boomsma,
  • Alexander Schönhuth,
  • Evan E. Eichler,
  • Paul I.W. de Bakker,
  • Kai Ye,
  • and Victor Guryev

  Genome Res. June 2015 25: 792-801; Published in Advance April 16, 2015, doi:10.1101/gr.185041.114
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  The clustering of functionally related genes contributes to CNV-mediated disease

  • Tallulah Andrews,
  • Frantisek Honti,
  • Rolph Pfundt,
  • Nicole de Leeuw,
  • Jayne Hehir-Kwa,
  • Anneke Vulto-van Silfhout,
  • Bert de Vries,
  • and Caleb Webber

  Genome Res. June 2015 25: 802-813; Published in Advance April 17, 2015, doi:10.1101/gr.184325.114
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  Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells

  • Young Seok Ju,
  • Jose M.C. Tubio,
  • William Mifsud,
  • Beiyuan Fu,
  • Helen R. Davies,
  • Manasa Ramakrishna,
  • Yilong Li,
  • Lucy Yates,
  • Gunes Gundem,
  • Patrick S. Tarpey,
  • Sam Behjati,
  • Elli Papaemmanuil,
  • Sancha Martin,
  • Anthony Fullam,
  • Moritz Gerstung,
  • ICGC Prostate Cancer Working Group,
  • ICGC Bone Cancer Working Group,
  • ICGC Breast Cancer Working Group,
  • Jyoti Nangalia,
  • Anthony R. Green,
  • Carlos Caldas,
  • Åke Borg,
  • Andrew Tutt,
  • Ming Ta Michael Lee,
  • Laura J. van't Veer,
  • Benita K.T. Tan,
  • Samuel Aparicio,
  • Paul N. Span,
  • John W.M. Martens,
  • Stian Knappskog,
  • Anne Vincent-Salomon,
  • Anne-Lise Børresen-Dale,
  • Jórunn Erla Eyfjörd,
  • Ola Myklebost,
  • Adrienne M. Flanagan,
  • Christopher Foster,
  • David E. Neal,
  • Colin Cooper,
  • Rosalind Eeles,
  • G. Steven Bova,
  • Sunil R. Lakhani,
  • Christine Desmedt,
  • Gilles Thomas,
  • Andrea L. Richardson,
  • Colin A. Purdie,
  • Alastair M. Thompson,
  • Ultan McDermott,
  • Fengtang Yang,
  • Serena Nik-Zainal,
  • Peter J. Campbell,
  • and Michael R. Stratton

  Genome Res. June 2015 25: 814-824; Published in Advance May 11, 2015, doi:10.1101/gr.190470.115
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  ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

  • Stephan R. Starick,
  • Jonas Ibn-Salem,
  • Marcel Jurk,
  • Céline Hernandez,
  • Michael I. Love,
  • Ho-Ryun Chung,
  • Martin Vingron,
  • Morgane Thomas-Chollier,
  • and Sebastiaan H. Meijsing

  Genome Res. June 2015 25: 825-835; Published in Advance February 26, 2015, doi:10.1101/gr.185157.114
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  Genomic redistribution of GR monomers and dimers mediates transcriptional response to exogenous glucocorticoid in vivo

  • Hee-Woong Lim,
  • N. Henriette Uhlenhaut,
  • Alexander Rauch,
  • Juliane Weiner,
  • Sabine Hübner,
  • Norbert Hübner,
  • Kyoung-Jae Won,
  • Mitchell A. Lazar,
  • Jan Tuckermann,
  • and David J. Steger

  Genome Res. June 2015 25: 836-844; Published in Advance May 8, 2015, doi:10.1101/gr.188581.114
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  Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing

  • Diana A. Stavreva,
  • Antoine Coulon,
  • Songjoon Baek,
  • Myong-Hee Sung,
  • Sam John,
  • Lenka Stixova,
  • Martina Tesikova,
  • Ofir Hakim,
  • Tina Miranda,
  • Mary Hawkins,
  • John A. Stamatoyannopoulos,
  • Carson C. Chow,
  • and Gordon L. Hager

  Genome Res. June 2015 25: 845-857; Published in Advance February 12, 2015, doi:10.1101/gr.184168.114
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  Antagonistic regulation of mRNA expression and splicing by CELF and MBNL proteins

  • Eric T. Wang,
  • Amanda J. Ward,
  • Jennifer M. Cherone,
  • Jimena Giudice,
  • Thomas T. Wang,
  • Daniel J. Treacy,
  • Nicole J. Lambert,
  • Peter Freese,
  • Tanvi Saxena,
  • Thomas A. Cooper,
  • and Christopher B. Burge

  Genome Res. June 2015 25: 858-871; Published in Advance April 16, 2015, doi:10.1101/gr.184390.114
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  A nucleosome turnover map reveals that the stability of histone H4 Lys20 methylation depends on histone recycling in transcribed chromatin

  • J. Peter Svensson,
  • Manu Shukla,
  • Victoria Menendez-Benito,
  • Ulrika Norman-Axelsson,
  • Pauline Audergon,
  • Indranil Sinha,
  • Jason C. Tanny,
  • Robin C. Allshire,
  • and Karl Ekwall

  Genome Res. June 2015 25: 872-883; Published in Advance March 16, 2015, doi:10.1101/gr.188870.114
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  Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast

  • Danny A. Bitton,
  • Sophie R. Atkinson,
  • Charalampos Rallis,
  • Graeme C. Smith,
  • David A. Ellis,
  • Yuan Y.C. Chen,
  • Michal Malecki,
  • Sandra Codlin,
  • Jean-François Lemay,
  • Cristina Cotobal,
  • François Bachand,
  • Samuel Marguerat,
  • Juan Mata,
  • and Jürg Bähler

  Genome Res. June 2015 25: 884-896; Published in Advance April 16, 2015, doi:10.1101/gr.185371.114
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  Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes

  • Pierre Chymkowitch,
  • Aurélie Nguéa P,
  • Håvard Aanes,
  • Christian J. Koehler,
  • Bernd Thiede,
  • Susanne Lorenz,
  • Leonardo A. Meza-Zepeda,
  • Arne Klungland,
  • and Jorrit M. Enserink

  Genome Res. June 2015 25: 897-906; Published in Advance March 23, 2015, doi:10.1101/gr.185793.114
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