Volume 25, Issue 3 | March 2015

Research
- - Actionable exomic incidental findings in 6503 participants: challenges of variant classification
    Laura M. Amendola
    Michael O. Dorschner
    Peggy D. Robertson
    Joseph S. Salama
    Ragan Hart
    Brian H. Shirts Mitzi L. Murray Mari J. Tokita Carlos J. Gallego Daniel Seung Kim James T. Bennett David R. Crosslin Jane Ranchalis Kelly L. Jones Elisabeth A. Rosenthal Ella R. Jarvik Andy Itsara Emily H. Turner Daniel S. Herman Jennifer Schleit Amber Burt Seema M. Jamal Jenica L. Abrudan Andrew D. Johnson Laura K. Conlin Matthew C. Dulik Avni Santani Danielle R. Metterville Melissa Kelly Ann Katherine M. Foreman Kristy Lee Kent D. Taylor Xiuqing Guo Kristy Crooks Lesli A. Kiedrowski Leslie J. Raffel Ora Gordon Kalotina Machini Robert J. Desnick Leslie G. Biesecker Steven A. Lubitz Surabhi Mulchandani Greg M. Cooper Steven Joffe C. Sue Richards Yaoping Yang Jerome I. Rotter Stephen S. Rich Christopher J. O’Donnell Jonathan S. Berg Nancy B. Spinner James P. Evans Stephanie M. Fullerton Kathleen A. Leppig Robin L. Bennett Thomas Bird Virginia P. Sybert William M. Grady Holly K. Tabor Jerry H. Kim Michael J. Bamshad Benjamin Wilfond Arno G. Motulsky C. Ronald Scott Colin C. Pritchard Tom D. Walsh Wylie Burke Wendy H. Raskind Peter Byers
    ...[+64 authors]...,
    Fuki M. Hisama
    Heidi Rehm
    Debbie A. Nickerson
    Gail P. Jarvik
    First Published January 30, 2015
  - Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution
    Hoon Kim
    Siyuan Zheng
    Seyed S. Amini
    Selene M. Virk
    Tom Mikkelsen
    Daniel J. Brat Jonna Grimsby Carrie Sougnez Florian Muller Jian Hu Andrew E. Sloan Mark L. Cohen Erwin G. Van Meir Lisa Scarpace Peter W. Laird John N. Weinstein Eric S. Lander Stacey Gabriel Gad Getz
    ...[+14 authors]...,
    Matthew Meyerson
    Lynda Chin
    Jill S. Barnholtz-Sloan
    Roel G.W. Verhaak
    First Published February 3, 2015
  - DNA methylation at hepatitis B viral integrants is associated with methylation at flanking human genomic sequences
    Yoshiyuki Watanabe
    Hiroyuki Yamamoto
    Ritsuko Oikawa
    Minoru Toyota
    Masakazu Yamamoto
    Norihiro Kokudo Shinji Tanaka
    ...[+2 authors]...,
    Shigeki Arii
    Hiroshi Yotsuyanagi
    Kazuhiko Koike
    Fumio Itoh
    First Published February 4, 2015
  - Methylomic trajectories across human fetal brain development
    Helen Spiers
    Eilis Hannon
    Leonard C. Schalkwyk
    Rebecca Smith
    Chloe C.Y. Wong
    First Published February 3, 2015
  - A systems-level approach to parental genomic imprinting: the imprinted gene network includes extracellular matrix genes and regulates cell cycle exit and differentiation
    Hala Al Adhami
    Brendan Evano
    Anne Le Digarcher
    Charlotte Gueydan
    Emeric Dubois
    Hugues Parrinello
    ...[+1 authors]...,
    Christelle Dantec
    Tristan Bouschet
    Annie Varrault
    Laurent Journot
    First Published January 22, 2015
  - Retrotransposons and pseudogenes regulate mRNAs and lncRNAs via the piRNA pathway in the germline
    Toshiaki Watanabe
    Ee-chun Cheng
    Mei Zhong
    Haifan Lin
    First Published December 5, 2014
  - Asymmetric nucleosomes flank promoters in the budding yeast genome
    Srinivas Ramachandran
    Gabriel E. Zentner
    Steven Henikoff
    First Published December 9, 2014
  - The spatial and temporal organization of origin firing during the S-phase of fission yeast
    Atanas Kaykov
    Paul Nurse
    First Published February 3, 2015
  - Break-seq reveals hydroxyurea-induced chromosome fragility as a result of unscheduled conflict between DNA replication and transcription
    Elizabeth A. Hoffman
    Andrew McCulley
    Brian Haarer
    Remigiusz Arnak
    Wenyi Feng
    First Published January 21, 2015
  - Genetic and phenotypic intra-species variation in Candida albicans
    Matthew P. Hirakawa
    Diego A. Martinez
    Sharadha Sakthikumar
    Matthew Z. Anderson
    Aaron Berlin
    Sharvari Gujja Qiandong Zeng Ethan Zisson Joshua M. Wang
    ...[+4 authors]...,
    Joshua M. Greenberg
    Judith Berman
    Richard J. Bennett
    Christina A. Cuomo
    First Published December 11, 2014
Methods
- - Detection and phasing of single base de novo mutations in biopsies from human in vitro fertilized embryos by advanced whole-genome sequencing
    Brock A. Peters
    Bahram G. Kermani
    Oleg Alferov
    Misha R. Agarwal
    Mark A. McElwain
    Natali Gulbahce Daniel M. Hayden Y. Tom Tang Rebecca Yu Zhang Rick Tearle Birgit Crain
    ...[+6 authors]...,
    Renata Prates
    Alan Berkeley
    Santiago Munné
    Radoje Drmanac
    First Published February 11, 2015
  - Bacterial genome reduction using the progressive clustering of deletions via yeast sexual cycling
    Yo Suzuki
    Nacyra Assad-Garcia
    Maxim Kostylev
    Vladimir N. Noskov
    Kim S. Wise
    Bogumil J. Karas Jason Stam Michael G. Montague Timothy J. Hanly Nico J. Enriquez Adi Ramon Gregory M. Goldgof R. Alexander Richter Sanjay Vashee Ray-Yuan Chuang Elizabeth A. Winzeler Clyde A. Hutchison
    ...[+12 authors]...,
    Daniel G. Gibson
    Hamilton O. Smith
    John I. Glass
    J. Craig Venter
    First Published February 5, 2015
Resource
- - The Release 6 reference sequence of the Drosophila melanogaster genome
    Roger A. Hoskins
    Joseph W. Carlson
    Kenneth H. Wan
    Soo Park
    Ivonne Mendez
    Samuel E. Galle Benjamin W. Booth Barret D. Pfeiffer Reed A. George Robert Svirskas Martin Krzywinski Jacqueline Schein Maria Carmela Accardo Elisabetta Damia Giovanni Messina María Méndez-Lago Beatriz de Pablos Olga V. Demakova Evgeniya N. Andreyeva Lidiya V. Boldyreva Marco Marra A. Bernardo Carvalho Patrizio Dimitri Alfredo Villasante
    ...[+19 authors]...,
    Igor F. Zhimulev
    Gerald M. Rubin
    Gary H. Karpen
    Susan E. Celniker
    First Published January 14, 2015

Table of Contents

Volume 25, Issue 3 | March 2015

Research

Actionable exomic incidental findings in 6503 participants: challenges of variant classification

Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution

DNA methylation at hepatitis B viral integrants is associated with methylation at flanking human genomic sequences

Methylomic trajectories across human fetal brain development

A systems-level approach to parental genomic imprinting: the imprinted gene network includes extracellular matrix genes and regulates cell cycle exit and differentiation

Retrotransposons and pseudogenes regulate mRNAs and lncRNAs via the piRNA pathway in the germline

Asymmetric nucleosomes flank promoters in the budding yeast genome

The spatial and temporal organization of origin firing during the S-phase of fission yeast

Break-seq reveals hydroxyurea-induced chromosome fragility as a result of unscheduled conflict between DNA replication and transcription

Genetic and phenotypic intra-species variation in Candida albicans

Methods

Detection and phasing of single base de novo mutations in biopsies from human in vitro fertilized embryos by advanced whole-genome sequencing

Bacterial genome reduction using the progressive clustering of deletions via yeast sexual cycling

Resource

The Release 6 reference sequence of the Drosophila melanogaster genome

Table of Contents

Volume 25, Issue 3 | March 2015

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Research

Methods

Resource