Volume 24, Issue 1 | January 2014

Research
- - Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits
    Olivia Corradin
    Alina Saiakhova
    Batool Akhtar-Zaidi
    Lois Myeroff
    Joseph Willis
    First Published November 6, 2013
  - Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
    Alexis Battle
    Sara Mostafavi
    Xiaowei Zhu
    James B. Potash
    Myrna M. Weissman
    Courtney McCormick Christian D. Haudenschild Kenneth B. Beckman Jianxin Shi Rui Mei
    ...[+5 authors]...,
    Alexander E. Urban
    Stephen B. Montgomery
    Douglas F. Levinson
    Daphne Koller
    First Published October 3, 2013
  - Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency
    Chan-Shuo Wu
    Chun-Ying Yu
    Ching-Yu Chuang
    Michael Hsiao
    Cheng-Fu Kao
    First Published October 16, 2013
  - Gene duplication and neofunctionalization: POLR3G and POLR3GL
    Marianne Renaud
    Viviane Praz
    Erwann Vieu
    Laurence Florens
    Michael P. Washburn
    First Published October 9, 2013
  - Natural variation in the histone demethylase, KDM4C, influences expression levels of specific genes including those that affect cell growth
    Brittany L. Gregory
    Vivian G. Cheung
    First Published November 27, 2013
  - Random replication of the inactive X chromosome
    Amnon Koren
    Steven A. McCarroll
    First Published September 24, 2013
  - Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica
    Xu Wang
    Kory C. Douglas
    John L. VandeBerg
    Andrew G. Clark
    Paul B. Samollow
    First Published September 24, 2013
  - The roles of cis- and trans-regulation in the evolution of regulatory incompatibilities and sexually dimorphic gene expression
    Colin D. Meiklejohn
    Joseph D. Coolon
    Daniel L. Hartl
    Patricia J. Wittkopp
    First Published September 16, 2013
  - Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements
    Joanne L. Harding
    Stuart Horswell
    Claire Heliot
    Javier Armisen
    Lyle B. Zimmerman
    First Published September 24, 2013
  - Maize centromeres expand and adopt a uniform size in the genetic background of oat
    Kai Wang
    Yufeng Wu
    Wenli Zhang
    R. Kelly Dawe
    Jiming Jiang
    First Published October 7, 2013
  - Independent RNA polymerase II preinitiation complex dynamics and nucleosome turnover at promoter sites in vivo
    Yoselin Grimaldi
    Paolo Ferrari
    Michel Strubin
    First Published December 2, 2013
Methods
- - Highly efficient gene knockout in mice and zebrafish with RNA-guided endonucleases
    Young Hoon Sung
    Jong Min Kim
    Hyun-Taek Kim
    Jaehoon Lee
    Jisun Jeon
    Young Jin Jung-Hwa Choi Young Ho Ban
    ...[+3 authors]...,
    Sang-Jun Ha
    Cheol-Hee Kim
    Han-Woong Lee
    Jin-Soo Kim
    First Published November 19, 2013
  - Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases
    Seung Woo Cho
    Sojung Kim
    Yongsub Kim
    Jiyeon Kweon
    Heon Seok Kim
    First Published November 19, 2013
  - Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair
    Thomas O. Auer
    Karine Duroure
    Anne De Cian
    Jean-Paul Concordet
    Filippo Del Bene
    First Published October 31, 2013
  - A unified model for yeast transcript definition
    Carl G. de Boer
    Harm van Bakel
    Kyle Tsui
    Joyce Li
    Quaid D. Morris
    First Published October 29, 2013
Resource
- - Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize
    Mei Zhang
    Shaojun Xie
    Xiaomei Dong
    Xin Zhao
    Biao Zeng
    Jian Chen Hui Li Weilong Yang Hainan Zhao Gaokui Wang Zongliang Chen
    ...[+6 authors]...,
    Silong Sun
    Andrew Hauck
    Weiwei Jin
    Jinsheng Lai
    First Published October 16, 2013

Table of Contents

Volume 24, Issue 1 | January 2014

Research

Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency

Gene duplication and neofunctionalization: POLR3G and POLR3GL

Natural variation in the histone demethylase, KDM4C, influences expression levels of specific genes including those that affect cell growth

Random replication of the inactive X chromosome

Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

The roles of cis- and trans-regulation in the evolution of regulatory incompatibilities and sexually dimorphic gene expression

Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements

Maize centromeres expand and adopt a uniform size in the genetic background of oat

Independent RNA polymerase II preinitiation complex dynamics and nucleosome turnover at promoter sites in vivo

Methods

Highly efficient gene knockout in mice and zebrafish with RNA-guided endonucleases

Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases

Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair

A unified model for yeast transcript definition

Resource

Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize

Table of Contents

Volume 24, Issue 1 | January 2014

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Research

Methods

Resource