Volume 23, Issue 8 | August 2013

Research
- - NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors
    Joseph D. Fleming
    Giulio Pavesi
    Paolo Benatti
    Carol Imbriano
    Roberto Mantovani
    First Published April 17, 2013
  - Enhancer transcripts mark active estrogen receptor binding sites
    Nasun Hah
    Shino Murakami
    Anusha Nagari
    Charles G. Danko
    W. Lee Kraus
    First Published May 1, 2013
  - The genomic landscape of cohesin-associated chromatin interactions
    Laura E. DeMare
    Jing Leng
    Justin Cotney
    Steven K. Reilly
    Jun Yin
    First Published May 23, 2013
  - Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
    Daniel F. Simola
    Lothar Wissler
    Greg Donahue
    Robert M. Waterhouse
    Martin Helmkampf
    Julien Roux Sanne Nygaard Karl M. Glastad Darren E. Hagen Lumi Viljakainen Justin T. Reese Brendan G. Hunt Dan Graur Eran Elhaik Evgenia V. Kriventseva Jiayu Wen Brian J. Parker Elizabeth Cash Eyal Privman Christopher P. Childers Monica C. Muñoz-Torres Jacobus J. Boomsma Erich Bornberg-Bauer Cameron R. Currie Christine G. Elsik Garret Suen Michael A.D. Goodisman Laurent Keller Jürgen Liebig Alan Rawls Danny Reinberg Chris D. Smith Chris R. Smith Neil Tsutsui
    ...[+29 authors]...,
    Yannick Wurm
    Evgeny M. Zdobnov
    Shelley L. Berger
    Jürgen Gadau
    First Published May 1, 2013
  - Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies
    Megan A. Supple
    Heather M. Hines
    Kanchon K. Dasmahapatra
    James J. Lewis
    Dahlia M. Nielsen
    Christine Lavoie
    ...[+1 authors]...,
    David A. Ray
    Camilo Salazar
    W. Owen McMillan
    Brian A. Counterman
    First Published May 14, 2013
  - Competition between virus-derived and endogenous small RNAs regulates gene expression in Caenorhabditis elegans
    Peter Sarkies
    Alyson Ashe
    Jérémie Le Pen
    Mikel A. McKie
    Eric A. Miska
    First Published June 28, 2013
  - Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen
    Ronnie de Jonge
    Melvin D. Bolton
    Anja Kombrink
    Grardy C.M. van den Berg
    Koste A. Yadeta
    First Published May 16, 2013
Methods
- - Proteome-wide discovery of mislocated proteins in cancer
    KiYoung Lee
    Kyunghee Byun
    Wonpyo Hong
    Han-Yu Chuang
    Chan-Gi Pack
    Enkhjargal Bayarsaikhan Sun Ha Paek
    ...[+2 authors]...,
    Hyosil Kim
    Hye Young Shin
    Trey Ideker
    Bonghee Lee
    First Published May 14, 2013
  - Inferring chromatin-bound protein complexes from genome-wide binding assays
    Eugenia G. Giannopoulou
    Olivier Elemento
    First Published April 3, 2013
  - Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers
    Aleksander Jankowski
    Ewa Szczurek
    Ralf Jauch
    Jerzy Tiuryn
    Shyam Prabhakar
    First Published April 3, 2013
  - Mapping functional transcription factor networks from gene expression data
    Brian C. Haynes
    Ezekiel J. Maier
    Michael H. Kramer
    Patricia I. Wang
    Holly Brown
    First Published May 1, 2013
Resources
- - The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains
    Toyoyuki Takada
    Toshinobu Ebata
    Hideki Noguchi
    Thomas M. Keane
    David J. Adams
    Takanori Narita Tadasu Shin-I Hironori Fujisawa Atsushi Toyoda Kuniya Abe Yuichi Obata Yoshiyuki Sakaki
    ...[+7 authors]...,
    Kazuo Moriwaki
    Asao Fujiyama
    Yuji Kohara
    Toshihiko Shiroishi
    First Published April 19, 2013
  - The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures
    Ron A.-J. Chen
    Thomas A. Down
    Przemyslaw Stempor
    Q. Brent Chen
    Thea A. Egelhofer
    First Published April 2, 2013
  - The transcription start site landscape of C. elegans
    Taro Leo Saito
    Shin-ichi Hashimoto
    Sam Guoping Gu
    J. Jason Morton
    Michael Stadler
    First Published May 1, 2013
Erratum
- - Erratum
    First Published August 1, 2013

Table of Contents

Volume 23, Issue 8 | August 2013

Research

NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors

Enhancer transcripts mark active estrogen receptor binding sites

The genomic landscape of cohesin-associated chromatin interactions

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies

Competition between virus-derived and endogenous small RNAs regulates gene expression in Caenorhabditis elegans

Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

Methods

Proteome-wide discovery of mislocated proteins in cancer

Inferring chromatin-bound protein complexes from genome-wide binding assays

Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers

Mapping functional transcription factor networks from gene expression data

Resources

The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains

The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures

The transcription start site landscape of C. elegans

Erratum

Erratum

Table of Contents

Volume 23, Issue 8 | August 2013

Share this issue

Research

Methods

Resources

Erratum