Index by Author

December 2013; 23 (12)
  1. A
  2. B
  3. C
  4. D
  5. E
  6. F
  7. G
  8. H
  9. I
  10. J
  11. K
  12. L
  13. M
  14. N
  15. O
  16. P
  17. Q
  18. R
  19. S
  20. T
  21. U
  22. V
  23. W
  24. X
  25. Y
  26. Z

A

  1. Abecasis, Gonçalo R.

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

  2. Abyzov, Alexej

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

  3. Agrawal, Saumya

  4. Allen, Jeremy J.

    • Derived variants at six genes explain nearly half of size reduction in dog breeds Genome Res. December 2013 23: 1985-1995; Published in Advance September 11, 2013, doi:10.1101/gr.157339.113
      OPEN ACCESS ARTICLE

  5. Araúzo-Bravo, Marcos J.

    • Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs Genome Res. December 2013 23: 2013-2029; Published in Advance October 22, 2013, doi:10.1101/gr.155960.113

  6. Arnoult, Nausica

B

  1. Balasubramanian, Suganthi

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

  2. Bartel, David P.

    • 3′ UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts Genome Res. December 2013 23: 2078-2090; Published in Advance September 26, 2013, doi:10.1101/gr.156919.113

  3. Beale, Holly C.

    • Derived variants at six genes explain nearly half of size reduction in dog breeds Genome Res. December 2013 23: 1985-1995; Published in Advance September 11, 2013, doi:10.1101/gr.157339.113
      OPEN ACCESS ARTICLE

  4. Bickmore, Wendy A.

    • H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction Genome Res. December 2013 23: 2053-2065; Published in Advance August 29, 2013, doi:10.1101/gr.155028.113

  5. Buchholz, Frank

  6. Burge, Christopher B.

    • 3′ UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts Genome Res. December 2013 23: 2078-2090; Published in Advance September 26, 2013, doi:10.1101/gr.156919.113

  7. Butter, Falk

C

  1. Campbell, Peter

  2. Candotti, Fabio

  3. Cazzaniga, Giovanni

D

  1. Decottignies, Anabelle

  2. Dekker, Job

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  3. Doelken, Sandra C.

  4. Dwinell, Melinda R.

E

  1. Ehm, Margaret G.

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

  2. Endres, Bradley

  3. Ermini, Luca

  4. Ernst, Jason

    • Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
      OPEN ACCESS ARTICLE

  5. Eskeland, Ragnhild

    • H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction Genome Res. December 2013 23: 2053-2065; Published in Advance August 29, 2013, doi:10.1101/gr.155028.113

F

  1. Faure, Andre J.

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  2. Fisher, Amanda G.

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  3. Flicek, Paul

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  4. Flister, Michael J.

  5. Floutsakou, Ioanna

  6. Ford, Anthony

  7. Frankish, Adam

    • Functional transcriptomics in the post-ENCODE era Genome Res. December 2013 23: 1961-1973; Published in Advance October 30, 2013, doi:10.1101/gr.161315.113
      OPEN ACCESS ARTICLE

  8. Freeman, Alexandra F.

G

  1. Ganley, Austen R.D.

  2. Geigerman, Cissy

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  3. Gerstein, Mark

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

  4. Geurts, Aron M.

  5. Giorgetti, Luca

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  6. Gokcumen, Omer

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

  7. Greaves, Mel

  8. Grimm, Sara A.

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  9. Guo, Hongshan

    • Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing Genome Res. December 2013 23: 2126-2135; Published in Advance October 31, 2013, doi:10.1101/gr.161679.113

H

  1. Habegger, Lukas

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

  2. Hansen, Peter

  3. Hardison, Ross C.

    • Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
      OPEN ACCESS ARTICLE

  4. Harrow, Jennifer

    • Functional transcriptomics in the post-ENCODE era Genome Res. December 2013 23: 1961-1973; Published in Advance October 30, 2013, doi:10.1101/gr.161315.113
      OPEN ACCESS ARTICLE

  5. Hatzi, Katerina

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  6. Heard, Edith

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  7. Hecht, Jochen

  8. Hekimoglu-Balkan, Betül

    • H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction Genome Res. December 2013 23: 2053-2065; Published in Advance August 29, 2013, doi:10.1101/gr.155028.113

  9. Hoffman, Matthew J.

  10. Holland, Steven M.

  11. Hoopes, Barbara C.

    • Derived variants at six genes explain nearly half of size reduction in dog breeds Genome Res. December 2013 23: 1985-1995; Published in Advance September 11, 2013, doi:10.1101/gr.157339.113
      OPEN ACCESS ARTICLE

  12. Horn, Denise

I

  1. Ibrahim, Daniel M.

  2. Ing-Simmons, Elizabeth

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  3. Iskow, Rebecca

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

J

  1. Jacob, Howard J.

  2. Jäger, Marten

  3. Janetzki, Catrin

  4. Jansen, Camden

    • Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
      OPEN ACCESS ARTICLE

  5. Jaye, David L.

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

K

  1. Kappei, Dennis

  2. Kearney, Lyndal

  3. Kellis, Manolis

    • Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
      OPEN ACCESS ARTICLE

  4. Kilroy-Glynn, Paul

    • Derived variants at six genes explain nearly half of size reduction in dog breeds Genome Res. December 2013 23: 1985-1995; Published in Advance September 11, 2013, doi:10.1101/gr.157339.113
      OPEN ACCESS ARTICLE

  5. Kong, Heidi H.

  6. Krawitz, Peter

L

  1. Lai, Anne Y.

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  2. Lajoie, Bryan R.

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  3. Lazar, Jozef

  4. Lee, Charles

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

  5. Lenhard, Boris

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  6. Leschik, Gundula

  7. Li, Jun Z.

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

  8. Li, Xianlong

    • Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing Genome Res. December 2013 23: 2126-2135; Published in Advance October 31, 2013, doi:10.1101/gr.161679.113

  9. Luu, Phuc-Loi

    • Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs Genome Res. December 2013 23: 2013-2029; Published in Advance October 22, 2013, doi:10.1101/gr.155960.113

M

  1. Mann, Matthias

  2. Marinov, Georgi K.

    • Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
      OPEN ACCESS ARTICLE

  3. Mav, Deepak

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  4. McCord, Rachel Patton

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  5. McStay, Brian

  6. Melnick, Ari

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  7. Merkenschlager, Matthias

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  8. Moreno, Carol

  9. Mortazavi, Ali

    • Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
      OPEN ACCESS ARTICLE

  10. Mudge, Jonathan M.

    • Functional transcriptomics in the post-ENCODE era Genome Res. December 2013 23: 1961-1973; Published in Advance October 30, 2013, doi:10.1101/gr.161315.113
      OPEN ACCESS ARTICLE

  11. Mundlos, Stefan

  12. Myers, Richard M.

    • Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
      OPEN ACCESS ARTICLE

N

  1. Nelson, Matthew R.

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

  2. Nguyen, Thong T.

  3. NISC Comparative Sequencing Program

  4. Novembre, John

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

O

  1. O'Meara, Caitlin C.

  2. Oh, Julia

  3. Ostrander, Elaine A.

    • Derived variants at six genes explain nearly half of size reduction in dog breeds Genome Res. December 2013 23: 1985-1995; Published in Advance September 11, 2013, doi:10.1101/gr.157339.113
      OPEN ACCESS ARTICLE

P

  1. Papaemmanuil, Elli

  2. Park, Morgan

  3. Pei, Baikang

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

  4. Pepke, Shirley

    • Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
      OPEN ACCESS ARTICLE

  5. Phadke, Dhiral

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  6. Potter, Nicola E.

  7. Pradeepa, Madapura M.

    • H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction Genome Res. December 2013 23: 2053-2065; Published in Advance August 29, 2013, doi:10.1101/gr.155028.113

R

  1. Radke, David W.

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

  2. Rimbault, Maud

    • Derived variants at six genes explain nearly half of size reduction in dog breeds Genome Res. December 2013 23: 1985-1995; Published in Advance September 11, 2013, doi:10.1101/gr.157339.113
      OPEN ACCESS ARTICLE

  3. Robinson, Peter N.

  4. Rödelsperger, Christian

S

  1. Schaibley, Valerie M.

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

  2. Scheibe, Marion

  3. Scheuer, Till

  4. Schmidt-von Kegler, Mareen

  5. Schoenebeck, Jeffrey J.

    • Derived variants at six genes explain nearly half of size reduction in dog breeds Genome Res. December 2013 23: 1985-1995; Published in Advance September 11, 2013, doi:10.1101/gr.157339.113
      OPEN ACCESS ARTICLE

  6. Schöler, Hans R.

    • Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs Genome Res. December 2013 23: 2013-2029; Published in Advance October 22, 2013, doi:10.1101/gr.155960.113

  7. Seemann, Petra

  8. Segre, Julia A.

  9. Seitan, Vlad C.

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  10. Seoighe, Cathal

  11. Shah, Ruchir

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  12. Sobol, Steve E.

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  13. Sokolic, Robert

  14. Spies, Noah

    • 3′ UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts Genome Res. December 2013 23: 2078-2090; Published in Advance September 26, 2013, doi:10.1101/gr.156919.113

  15. St. Jean, Pamela L.

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

  16. Stiege, Asita C.

  17. Sutter, Nathan B.

    • Derived variants at six genes explain nearly half of size reduction in dog breeds Genome Res. December 2013 23: 1985-1995; Published in Advance September 11, 2013, doi:10.1101/gr.157339.113
      OPEN ACCESS ARTICLE

T

  1. Tang, Fuchou

    • Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing Genome Res. December 2013 23: 2126-2135; Published in Advance October 31, 2013, doi:10.1101/gr.161679.113

  2. Taylor, Gillian C.A.

    • H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction Genome Res. December 2013 23: 2053-2065; Published in Advance August 29, 2013, doi:10.1101/gr.155028.113

  3. The 1000 Genomes Project Consortium

    • Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
      OPEN ACCESS ARTICLE

  4. Timmermann, Bernd

  5. Titley, Ian

  6. Tsaih, Shirng-Wern

V

  1. Vijayaraghavan, Gowri

W

  1. Wade, Paul A.

    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation Genome Res. December 2013 23: 2030-2041; Published in Advance September 6, 2013, doi:10.1101/gr.155473.113

  2. Wagner, Florian

  3. Wayne, Robert K.

    • Derived variants at six genes explain nearly half of size reduction in dog breeds Genome Res. December 2013 23: 1985-1995; Published in Advance September 11, 2013, doi:10.1101/gr.157339.113
      OPEN ACCESS ARTICLE

  4. Wegmann, Daniel

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

  5. Wen, Lu

    • Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing Genome Res. December 2013 23: 2126-2135; Published in Advance October 31, 2013, doi:10.1101/gr.161679.113

  6. Wold, Barbara J.

    • Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
      OPEN ACCESS ARTICLE

  7. Wu, Xinglong

    • Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing Genome Res. December 2013 23: 2126-2135; Published in Advance October 31, 2013, doi:10.1101/gr.161679.113

Z

  1. Zawistowski, Matthew

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

  2. Zhan, Ye

    • Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. December 2013 23: 2066-2077; Published in Advance September 3, 2013, doi:10.1101/gr.161620.113

  3. Zhu, Ping

    • Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing Genome Res. December 2013 23: 2126-2135; Published in Advance October 31, 2013, doi:10.1101/gr.161679.113

  4. Zöllner, Sebastian

    • The influence of genomic context on mutation patterns in the human genome inferred from rare variants Genome Res. December 2013 23: 1974-1984; Published in Advance August 29, 2013, doi:10.1101/gr.154971.113

Current Issue

  1. January 2026, 36 (1)
  1. Current Issue
  1. Alert me to new issues of Genome Research