Index by Author

January 2013; 23 (1)
  1. A
  2. B
  3. C
  4. D
  5. E
  6. F
  7. G
  8. H
  9. I
  10. J
  11. K
  12. L
  13. M
  14. N
  15. O
  16. P
  17. Q
  18. R
  19. S
  20. T
  21. U
  22. V
  23. W
  24. X
  25. Y
  26. Z

A

  1. Abecasis, Gonçalo R.

  2. Aerts, Stein

    • Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112

  3. Andolfatto, Peter

    • A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence Genome Res. January 2013 23: 89-98; Published in Advance August 30, 2012, doi:10.1101/gr.141689.112
      OPEN ACCESS ARTICLE

  4. Arbuckle, Susan

  5. Arnold, Phil

    • Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting Genome Res. January 2013 23: 60-73; Published in Advance September 10, 2012, doi:10.1101/gr.142661.112
      OPEN ACCESS ARTICLE

  6. Au, Kin Fai

    • RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development Genome Res. January 2013 23: 201-216; Published in Advance September 7, 2012, doi:10.1101/gr.141424.112

B

  1. Baker, Julie C.

    • RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development Genome Res. January 2013 23: 201-216; Published in Advance September 7, 2012, doi:10.1101/gr.141424.112

  2. Balwierz, Piotr J.

    • Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting Genome Res. January 2013 23: 60-73; Published in Advance September 10, 2012, doi:10.1101/gr.142661.112
      OPEN ACCESS ARTICLE

  3. Banerjee, Onureena

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  4. Banfi, Stefania

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

  5. Banfield, Jillian F.

    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization Genome Res. January 2013 23: 111-120; Published in Advance August 30, 2012, doi:10.1101/gr.142315.112

  6. Batut, Philippe

    • High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression Genome Res. January 2013 23: 169-180; Published in Advance August 30, 2012, doi:10.1101/gr.139618.112

  7. Beaver, Lauren E.

    • Efficient targeted mutagenesis in the monarch butterfly using zinc-finger nucleases Genome Res. January 2013 23: 159-168; Published in Advance September 25, 2012, doi:10.1101/gr.145599.112
      OPEN ACCESS ARTICLE

  8. Bolund, Lars

  9. Brosens, Erwin

  10. Busonero, Fabio

C

  1. Carninci, Piero

    • High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression Genome Res. January 2013 23: 169-180; Published in Advance August 30, 2012, doi:10.1101/gr.139618.112

  2. Carroll, Jason S.

  3. Casares, Fernando

    • Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112

  4. Cesaroni, Matteo

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

  5. Chen, Bo

  6. Chen, Wei

  7. Chen-Plotkin, Alice

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  8. Chess, Andrew

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  9. Chopra, Maya

  10. Christiaens, Valerie

    • Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112

  11. Chuang, Jason

    • RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development Genome Res. January 2013 23: 201-216; Published in Advance September 7, 2012, doi:10.1101/gr.141424.112

  12. Cittaro, Davide

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

  13. Clark, Tyson A.

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  14. Costello, Elizabeth K.

    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization Genome Res. January 2013 23: 111-120; Published in Advance August 30, 2012, doi:10.1101/gr.142315.112

D

  1. de Klein, Annelies

  2. Dellino, Gaetano Ivan

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

  3. Dharmadhikari, Avinash V.

  4. Dittwald, Piotr

  5. Dobin, Alexander

    • High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression Genome Res. January 2013 23: 169-180; Published in Advance August 30, 2012, doi:10.1101/gr.139618.112

E

  1. Eichler, Evan E.

  2. Eid, John S.

  3. Eisen, Michael B.

    • A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence Genome Res. January 2013 23: 89-98; Published in Advance August 30, 2012, doi:10.1101/gr.141689.112
      OPEN ACCESS ARTICLE

F

  1. Fang, Gang

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  2. Feng, Zhixing

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  3. Fisher, Richard

G

  1. Giacca, Mauro

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

  2. Giannuzzi, Giuliana

  3. Gingeras, Thomas R.

    • High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression Genome Res. January 2013 23: 169-180; Published in Advance August 30, 2012, doi:10.1101/gr.139618.112

  4. Guiang, Sixto F., III

  5. Gurha, Priyatansh

  6. Guschanski, Katerina

  7. Guthöhrlein, Eckhart W.

H

  1. Haagen, Lotte

    • Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112

  2. Hagerman, Paul J.

  3. Hagerman, Randi J.

  4. Hartmann, Holger

  5. Hickey, Luke

  6. Hirsch, Russel

  7. Hu, Haiyang

  8. Hu, Tina T.

    • A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence Genome Res. January 2013 23: 89-98; Published in Advance August 30, 2012, doi:10.1101/gr.141689.112
      OPEN ACCESS ARTICLE

  9. Hustead, Virginia A.

J

  1. Jessurun, Jose

  2. Jørgensen, Helle

    • Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting Genome Res. January 2013 23: 60-73; Published in Advance September 10, 2012, doi:10.1101/gr.142661.112
      OPEN ACCESS ARTICLE

K

  1. Kaessmann, Henrik

  2. Kang, Hyun Min

  3. Kasarskis, Andrew

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  4. Keren-Paz, Alona

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  5. Khaitovich, Philipp

  6. Kislyuk, Andrey

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  7. Kofler, Robert

    • Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana Genome Res. January 2013 23: 99-110; Published in Advance October 10, 2012, doi:10.1101/gr.139873.112
      OPEN ACCESS ARTICLE

  8. Korlach, Jonas

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  9. Kołodziejska, Katarzyna E.

  10. Kumar, Vipin

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

L

  1. Langston, Claire

  2. Lemoine, Frédéric

  3. Li, Bingshan

  4. Li, Heng

  5. Li, Jin Billy

    • RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development Genome Res. January 2013 23: 201-216; Published in Advance September 7, 2012, doi:10.1101/gr.141424.112

  6. Li, Ruiqiang

  7. Li, Shengting

  8. Li, Yingrui

  9. Li, Yun

  10. Liechti, Angélica

  11. Loomis, Erick W.

  12. Lu, Jianliang

  13. Luehr, Sebastian

  14. Luong, Khai

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  15. Luzi, Lucilla

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

M

  1. Majewski, Tadeusz

  2. Malcolm, Girvan

  3. Malig, Maika

  4. Marques-Bonet, Tomas

  5. Maystadt, Isabelle

  6. McCalmon, Sarah

  7. Mendoza-Maldonado, Ramiro

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

  8. Menon, Suraj

  9. Merlin, Christine

    • Efficient targeted mutagenesis in the monarch butterfly using zinc-finger nucleases Genome Res. January 2013 23: 159-168; Published in Advance September 25, 2012, doi:10.1101/gr.145599.112
      OPEN ACCESS ARTICLE

  10. Meunier, Julien

  11. Mohan, K. Naga

  12. Morowitz, Michael J.

    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization Genome Res. January 2013 23: 111-120; Published in Advance August 30, 2012, doi:10.1101/gr.142315.112

  13. Mullikin, James C.

  14. Munck, Sebastian

    • Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112

N

  1. Naval-Sánchez, Marina

    • Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112

  2. NISC Comparative Sequencing Program

  3. Nolte, Viola

    • Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana Genome Res. January 2013 23: 99-110; Published in Advance October 10, 2012, doi:10.1101/gr.139873.112
      OPEN ACCESS ARTICLE

P

  1. Pachkov, Mikhail

    • Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting Genome Res. January 2013 23: 60-73; Published in Advance September 10, 2012, doi:10.1101/gr.142661.112
      OPEN ACCESS ARTICLE

  2. Pandey, Ram Vinay

    • Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana Genome Res. January 2013 23: 99-110; Published in Advance October 10, 2012, doi:10.1101/gr.139873.112
      OPEN ACCESS ARTICLE

  3. Pelicci, Pier Giuseppe

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

  4. Peluso, Paul

  5. Person, Richard E.

  6. Peters, Gregory

  7. Piccioni, Rossana

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

  8. Pinner, Jason

  9. Plessy, Charles

    • High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression Genome Res. January 2013 23: 169-180; Published in Advance August 30, 2012, doi:10.1101/gr.139618.112

  10. Potier, Delphine

    • Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112

R

  1. Rank, David

  2. Relman, David A.

    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization Genome Res. January 2013 23: 111-120; Published in Advance August 30, 2012, doi:10.1101/gr.142315.112

  3. Reppert, Steven M.

    • Efficient targeted mutagenesis in the monarch butterfly using zinc-finger nucleases Genome Res. January 2013 23: 159-168; Published in Advance September 25, 2012, doi:10.1101/gr.145599.112
      OPEN ACCESS ARTICLE

S

  1. Sánchez, Máximo

    • Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112

  2. Sanna, Serena

  3. Schadt, Eric E.

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  4. Scheet, Paul

  5. Schierup, Mikkel H.

  6. Schlötterer, Christian

    • Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana Genome Res. January 2013 23: 99-110; Published in Advance October 10, 2012, doi:10.1101/gr.139873.112
      OPEN ACCESS ARTICLE

  7. Schöler, Anne

    • Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting Genome Res. January 2013 23: 60-73; Published in Advance September 10, 2012, doi:10.1101/gr.142661.112
      OPEN ACCESS ARTICLE

  8. Schübeler, Dirk

    • Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting Genome Res. January 2013 23: 60-73; Published in Advance September 10, 2012, doi:10.1101/gr.142661.112
      OPEN ACCESS ARTICLE

  9. Sebire, Neil

  10. Segalla, Simona

    • Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing Genome Res. January 2013 23: 1-11; Published in Advance November 27, 2012, doi:10.1101/gr.142331.112

  11. Sen, Partha

  12. Sharon, Itai

    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization Genome Res. January 2013 23: 111-120; Published in Advance August 30, 2012, doi:10.1101/gr.142315.112

  13. Sidore, Carlo

  14. Siebert, Matthias

  15. Siswara, Priscillia

  16. Söding, Johannes

  17. Sondheimer, Neal

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  18. Soumillon, Magali

  19. Stadler, Michael B.

    • Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting Genome Res. January 2013 23: 60-73; Published in Advance September 10, 2012, doi:10.1101/gr.142661.112
      OPEN ACCESS ARTICLE

  20. Stankiewicz, Paweł

  21. Stark, Rory

  22. Szafranski, Przemyslaw

T

  1. Tan, Meng How

    • RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development Genome Res. January 2013 23: 201-216; Published in Advance September 7, 2012, doi:10.1101/gr.141424.112

  2. Tassone, Flora

  3. Taylor, Orley R.

    • Efficient targeted mutagenesis in the monarch butterfly using zinc-finger nucleases Genome Res. January 2013 23: 159-168; Published in Advance September 25, 2012, doi:10.1101/gr.145599.112
      OPEN ACCESS ARTICLE

  4. Theodorou, Vasiliki

  5. Thomas, Brian C.

    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization Genome Res. January 2013 23: 111-120; Published in Advance August 30, 2012, doi:10.1101/gr.142315.112

  6. Thornton, Kevin R.

    • A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence Genome Res. January 2013 23: 89-98; Published in Advance August 30, 2012, doi:10.1101/gr.141689.112
      OPEN ACCESS ARTICLE

  7. Tibboel, Dick

V

  1. Van de Sande, Bram

    • Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112

  2. van Nimwegen, Erik

    • Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting Genome Res. January 2013 23: 60-73; Published in Advance September 10, 2012, doi:10.1101/gr.142661.112
      OPEN ACCESS ARTICLE

  3. Vattathil, Selina

  4. Ventura, Mario

W

  1. Wang, Jun

  2. Weier, Manuela

  3. Wills, Andrea E.

    • RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development Genome Res. January 2013 23: 201-216; Published in Advance September 7, 2012, doi:10.1101/gr.141424.112

  4. Witte, David P.

  5. Wolfe, Scot A.

    • Efficient targeted mutagenesis in the monarch butterfly using zinc-finger nucleases Genome Res. January 2013 23: 159-168; Published in Advance September 25, 2012, doi:10.1101/gr.145599.112
      OPEN ACCESS ARTICLE

  6. Wong, Wing H.

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  7. Wong, Wing Hung

    • RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development Genome Res. January 2013 23: 201-216; Published in Advance September 7, 2012, doi:10.1101/gr.141424.112

Y

  1. Yablonovitch, Arielle L.

    • RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development Genome Res. January 2013 23: 201-216; Published in Advance September 7, 2012, doi:10.1101/gr.141424.112

  2. Yin, Jun

Z

  1. Zeng, Zhen

  2. Zhang, Xuegong

    • Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. January 2013 23: 129-141; Published in Advance October 23, 2012, doi:10.1101/gr.136739.111
      OPEN ACCESS ARTICLE

  3. Zhishuo, Ou

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