Volume 22, Issue 1 | January 2012

Research
- - Rare versus common variants in pharmacogenetics: SLCO1B1 variation and methotrexate disposition
    Laura B. Ramsey
    Gitte H. Bruun
    Wenjian Yang
    Lisa R. Treviño
    Selina Vattathil
    Paul Scheet Cheng Cheng Gary L. Rosner Kathleen M. Giacomini Yiping Fan Alex Sparreboom Torben S. Mikkelsen
    ...[+7 authors]...,
    Thomas J. Corydon
    Ching-Hon Pui
    William E. Evans
    Mary V. Relling
    First Published December 6, 2011
  - Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
    Bum-Kyu Lee
    Akshay A. Bhinge
    Anna Battenhouse
    Ryan M. McDaniell
    Zheng Liu
    Lingyun Song Yunyun Ni Ewan Birney
    ...[+3 authors]...,
    Jason D. Lieb
    Terrence S. Furey
    Gregory E. Crawford
    Vishwanath R. Iyer
    First Published November 16, 2011
  - Aberrant firing of replication origins potentially explains intragenic nonrecurrent rearrangements within genes, including the human DMD gene
    Arunkanth Ankala
    Jordan N. Kohn
    Anisha Hegde
    Arjun Meka
    Chin Lip Hon Ephrem
    First Published November 16, 2011
  - Changes in exon–intron structure during vertebrate evolution affect the splicing pattern of exons
    Sahar Gelfman
    David Burstein
    Osnat Penn
    Anna Savchenko
    Maayan Amit
    First Published October 5, 2011
  - Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome
    Erik Axelsson
    Matthew T. Webster
    Abhirami Ratnakumar
    Chris P. Ponting
    Kerstin Lindblad-Toh
    First Published October 17, 2011
  - Developmental control of gene copy number by repression of replication initiation and fork progression
    Noa Sher
    George W. Bell
    Sharon Li
    Jared Nordman
    Thomas Eng
    First Published November 16, 2011
  - A novel candidate cis-regulatory motif pair in the promoters of germline and oogenesis genes in C. elegans
    Chaim Linhart
    Yonit Halperin
    Amir Darom
    Shahar Kidron
    Limor Broday
    First Published September 19, 2011
  - A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast
    Judith B. Zaugg
    Nicholas M. Luscombe
    First Published September 19, 2011
  - Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus
    Eli Rodgers-Melnick
    Shrinivasrao P. Mane
    Palitha Dharmawardhana
    Gancho T. Slavov
    Oswald R. Crasta
    First Published October 5, 2011
  - Genomic basis of endosymbiont-conferred protection against an insect parasitoid
    Allison K. Hansen
    Christoph Vorburger
    Nancy A. Moran
    First Published September 23, 2011
  - Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution
    Herwig Bachmann
    Marjo J.C. Starrenburg
    Douwe Molenaar
    Michiel Kleerebezem
    Johan E.T. van Hylckama Vlieg
    First Published November 11, 2011
Methods
- - Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA
    Nicholas J. Parkinson
    Siarhei Maslau
    Ben Ferneyhough
    Gang Zhang
    Lorna Gregory
    First Published November 16, 2011
  - Transposase mediated construction of RNA-seq libraries
    Jason Gertz
    Katherine E. Varley
    Nicholas S. Davis
    Bradley J. Baas
    Igor Y. Goryshin
    First Published November 29, 2011
  - Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
    Jae Hoon Bahn
    Jae-Hyung Lee
    Gang Li
    Christopher Greer
    Guangdun Peng
    First Published September 29, 2011
Resources
- - High-resolution mapping of open chromatin in the rice genome
    Wenli Zhang
    Yufeng Wu
    James C. Schnable
    Zixian Zeng
    Michael Freeling
    First Published November 22, 2011
  - High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    Natalie W. Breakfield
    David L. Corcoran
    Jalean J. Petricka
    Jeffrey Shen
    Juthamas Sae-Seaw
    First Published September 22, 2011

Table of Contents

Volume 22, Issue 1 | January 2012

Research

Rare versus common variants in pharmacogenetics: SLCO1B1 variation and methotrexate disposition

Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells

Aberrant firing of replication origins potentially explains intragenic nonrecurrent rearrangements within genes, including the human DMD gene

Changes in exon–intron structure during vertebrate evolution affect the splicing pattern of exons

Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

Developmental control of gene copy number by repression of replication initiation and fork progression

A novel candidate cis-regulatory motif pair in the promoters of germline and oogenesis genes in C. elegans

A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

Genomic basis of endosymbiont-conferred protection against an insect parasitoid

Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution

Methods

Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA

Transposase mediated construction of RNA-seq libraries

Accurate identification of A-to-I RNA editing in human by transcriptome sequencing

Resources

High-resolution mapping of open chromatin in the rice genome

High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis

Table of Contents

Volume 22, Issue 1 | January 2012

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Research

Methods

Resources