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  Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs

  • Michael Schnall-Levin,
  • Olivia S. Rissland,
  • Wendy K. Johnston,
  • Norbert Perrimon,
  • David P. Bartel,
  • and Bonnie Berger

  Genome Res. September 2011 21: 1395-1403; Published in Advance June 17, 2011, doi:10.1101/gr.121210.111
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  Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes

  • Nagesha A.S. Rao,
  • Melysia T. McCalman,
  • Panagiotis Moulos,
  • Kees-Jan Francoijs,
  • Aristotelis Chatziioannou,
  • Fragiskos N. Kolisis,
  • Michael N. Alexis,
  • Dimitra J. Mitsiou,
  • and Hendrik G. Stunnenberg

  Genome Res. September 2011 21: 1404-1416; Published in Advance July 12, 2011, doi:10.1101/gr.118042.110
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  Alterations in TCF7L2 expression define its role as a key regulator of glucose metabolism

  • Daniel Savic,
  • Honggang Ye,
  • Ivy Aneas,
  • Soo-Young Park,
  • Graeme I. Bell,
  • and Marcelo A. Nobrega

  Genome Res. September 2011 21: 1417-1425; Published in Advance June 14, 2011, doi:10.1101/gr.123745.111
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  Histone H3 trimethylation at lysine 36 is associated with constitutive and facultative heterochromatin

  • Sophie Chantalat,
  • Arnaud Depaux,
  • Patrick Héry,
  • Sophie Barral,
  • Jean-Yves Thuret,
  • Stefan Dimitrov,
  • and Matthieu Gérard

  Genome Res. September 2011 21: 1426-1437; Published in Advance July 29, 2011, doi:10.1101/gr.118091.110
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  Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

  • Christelle Cayrou,
  • Philippe Coulombe,
  • Alice Vigneron,
  • Slavica Stanojcic,
  • Olivier Ganier,
  • Isabelle Peiffer,
  • Eric Rivals,
  • Aurore Puy,
  • Sabine Laurent-Chabalier,
  • Romain Desprat,
  • and Marcel Méchali

  Genome Res. September 2011 21: 1438-1449; Published in Advance July 12, 2011, doi:10.1101/gr.121830.111
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  Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity

  • Stacia K. Wyman,
  • Emily C. Knouf,
  • Rachael K. Parkin,
  • Brian R. Fritz,
  • Daniel W. Lin,
  • Lucas M. Dennis,
  • Michael A. Krouse,
  • Philippa J. Webster,
  • and Muneesh Tewari

  Genome Res. September 2011 21: 1450-1461; Published in Advance August 3, 2011, doi:10.1101/gr.118059.110
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  Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles

  • Jianbin Wang,
  • Benjamin Czech,
  • Amanda Crunk,
  • Adam Wallace,
  • Makedonka Mitreva,
  • Gregory J. Hannon,
  • and Richard E. Davis

  Genome Res. September 2011 21: 1462-1477; Published in Advance June 17, 2011, doi:10.1101/gr.121426.111
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  Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing

  • Yingjia Shen,
  • R.C. Venu,
  • Kan Nobuta,
  • Xiaohui Wu,
  • Varun Notibala,
  • Caghan Demirci,
  • Blake C. Meyers,
  • Guo-Liang Wang,
  • Guoli Ji,
  • and Qingshun Q. Li

  Genome Res. September 2011 21: 1478-1486; Published in Advance August 3, 2011, doi:10.1101/gr.114744.110
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  Genome-wide detection of novel regulatory RNAs in E. coli

  • Rahul Raghavan,
  • Eduardo A. Groisman,
  • and Howard Ochman

  Genome Res. September 2011 21: 1487-1497; Published in Advance June 10, 2011, doi:10.1101/gr.119370.110
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