Volume 21, Issue 6 | June 2011

Perspective
- - Reading TE leaves: New approaches to the identification of transposable element insertions
    David A. Ray
    Mark A. Batzer
    First Published June 1, 2011
Research
- - Human population dispersal “Out of Africa” estimated from linkage disequilibrium and allele frequencies of SNPs
    Brian P. McEvoy
    Joseph E. Powell
    Michael E. Goddard
    Peter M. Visscher
    First Published April 25, 2011
  - Natural genetic variation caused by small insertions and deletions in the human genome
    Ryan E. Mills
    W. Stephen Pittard
    Julienne M. Mullaney
    Umar Farooq
    Todd H. Creasy
    Anup A. Mahurkar David M. Kemeza
    ...[+2 authors]...,
    Daniel S. Strassler
    Chris P. Ponting
    Caleb Webber
    Scott E. Devine
    First Published April 1, 2011
  - Alu repeat discovery and characterization within human genomes
    Fereydoun Hormozdiari
    Can Alkan
    Mario Ventura
    Iman Hajirasouliha
    Maika Malig
    Faraz Hach Deniz Yorukoglu
    ...[+2 authors]...,
    Phuong Dao
    Marzieh Bakhshi
    S. Cenk Sahinalp
    Evan E. Eichler
    First Published December 3, 2010
  - Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus
    Julie E. Horvath
    Christina B. Sheedy
    Stephanie L. Merrett
    Abdoulaye Banire Diallo
    David L. Swofford
    First Published April 25, 2011
  - High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes
    Penka Markova-Raina
    Dmitri Petrov
    First Published March 10, 2011
  - Stable and dynamic nucleosome states during a meiotic developmental process
    Liye Zhang
    Hong Ma
    B. Franklin Pugh
    First Published April 22, 2011
  - Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88
    Mikael R. Andersen
    Margarita P. Salazar
    Peter J. Schaap
    Peter J.I. van de Vondervoort
    David Culley
    Jette Thykaer Jens C. Frisvad Kristian F. Nielsen Richard Albang Kaj Albermann Randy M. Berka Gerhard H. Braus Susanna A. Braus-Stromeyer Luis M. Corrochano Ziyu Dai Piet W.M. van Dijck Gerald Hofmann Linda L. Lasure Jon K. Magnuson Hildegard Menke Martin Meijer Susan L. Meijer Jakob B. Nielsen Michael L. Nielsen Albert J.J. van Ooyen Herman J. Pel Lars Poulsen Rob A. Samson Hein Stam Adrian Tsang Johannes M. van den Brink Alex Atkins Andrea Aerts Harris Shapiro Jasmyn Pangilinan Asaf Salamov Yigong Lou Erika Lindquist Susan Lucas Jane Grimwood Igor V. Grigoriev Christian P. Kubicek Diego Martinez
    ...[+38 authors]...,
    Noël N.M.E. van Peij
    Johannes A. Roubos
    Jens Nielsen
    Scott E. Baker
    First Published May 4, 2011
Methods
- - Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy
    Wuxian Shi
    Marco Punta
    Jen Bohon
    J. Michael Sauder
    Rhijuta D'Mello
    Mike Sullivan John Toomey Don Abel Marco Lippi Andrea Passerini
    ...[+5 authors]...,
    Paolo Frasconi
    Stephen K. Burley
    Burkhard Rost
    Mark R. Chance
    First Published April 11, 2011
  - Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome
    Dal-Hoe Koo
    Fangpu Han
    James A. Birchler
    Jiming Jiang
    First Published April 25, 2011
  - High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome
    Sam Alsford
    Daniel J. Turner
    Samson O. Obado
    Alejandro Sanchez-Flores
    Lucy Glover
    First Published March 1, 2011
  - Transcript amplification from single bacterium for transcriptome analysis
    Yun Kang
    Michael H. Norris
    Jan Zarzycki-Siek
    William C. Nierman
    Stuart P. Donachie
    First Published May 2, 2011
Resources
- - Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
    Gerton Lunter
    Martin Goodson
    First Published October 27, 2010
  - Low-coverage sequencing: Implications for design of complex trait association studies
    Yun Li
    Carlo Sidore
    Hyun Min Kang
    Michael Boehnke
    Gonçalo R. Abecasis
    First Published April 1, 2011
  - SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
    Si Quang Le
    Richard Durbin
    First Published October 27, 2010
  - Dindel: Accurate indel calls from short-read data
    Cornelis A. Albers
    Gerton Lunter
    Daniel G. MacArthur
    Gilean McVean
    Willem H. Ouwehand
    First Published October 27, 2010
  - CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
    Alexej Abyzov
    Alexander E. Urban
    Michael Snyder
    Mark Gerstein
    First Published February 7, 2011
  - Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
    Adam D. Ewing
    Haig H. Kazazian
    First Published October 27, 2010
  - RNA-sequence analysis of human B-cells
    Jonathan M. Toung
    Michael Morley
    Mingyao Li
    Vivian G. Cheung
    First Published May 2, 2011
Erratum
- - Erratum
    First Published June 1, 2011

Table of Contents

Volume 21, Issue 6 | June 2011

Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

Research

Human population dispersal “Out of Africa” estimated from linkage disequilibrium and allele frequencies of SNPs

Natural genetic variation caused by small insertions and deletions in the human genome

Alu repeat discovery and characterization within human genomes

Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes

Stable and dynamic nucleosome states during a meiotic developmental process

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

Methods

Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy

Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome

High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome

Transcript amplification from single bacterium for transcriptome analysis

Resources

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

Low-coverage sequencing: Implications for design of complex trait association studies

SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples

Dindel: Accurate indel calls from short-read data

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans

RNA-sequence analysis of human B-cells

Erratum

Erratum

Table of Contents

Volume 21, Issue 6 | June 2011

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Perspective

Research

Methods

Resources

Erratum