Volume 21, Issue 4 | April 2011

Research
- - RAF gene fusion breakpoints in pediatric brain tumors are characterized by significant enrichment of sequence microhomology
    Andrew R.J. Lawson
    Guy F.L. Hindley
    Tim Forshew
    Ruth G. Tatevossian
    Gabriel A. Jamie
    Gavin P. Kelly Geoffrey A. Neale
    ...[+2 authors]...,
    Jing Ma
    Tania A. Jones
    David W. Ellison
    Denise Sheer
    First Published March 10, 2011
  - Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors
    Andrew Feber
    Gareth A. Wilson
    Lu Zhang
    Nadege Presneau
    Bernadine Idowu
    Thomas A. Down Vardhman K. Rakyan Luke A. Noon Alison C. Lloyd Elia Stupka Vassia Schiza
    ...[+6 authors]...,
    Andrew E. Teschendorff
    Gary P. Schroth
    Adrienne Flanagan
    Stephan Beck
    First Published February 1, 2011
  - Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles
    Karen D. Howarth
    Jessica C.M. Pole
    Juliet C. Beavis
    Elizabeth M. Batty
    Scott Newman
    First Published January 20, 2011
  - Recurrence, submicroscopic complexity, and potential clinical relevance of copy gains detected by array CGH that are shown to be unbalanced insertions by FISH
    Nicholas J. Neill
    Blake C. Ballif
    Allen N. Lamb
    Sumit Parikh
    J. Britt Ravnan
    First Published March 7, 2011
  - RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression
    Emilie Lalonde
    Kevin C.H. Ha
    Zibo Wang
    Amandine Bemmo
    Claudia L. Kleinman
    First Published December 20, 2010
  - Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
    Aurélien A. Sérandour
    Stéphane Avner
    Frédéric Percevault
    Florence Demay
    Maud Bizot
    Céline Lucchetti-Miganeh Frédérique Barloy-Hubler Myles Brown
    ...[+3 authors]...,
    Mathieu Lupien
    Raphaël Métivier
    Gilles Salbert
    Jérôme Eeckhoute
    First Published January 13, 2011
  - High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation
    Anil Ozdemir
    Katherine I. Fisher-Aylor
    Shirley Pepke
    Manoj Samanta
    Leslie Dunipace
    Kenneth McCue
    ...[+1 authors]...,
    Lucy Zeng
    Nobuo Ogawa
    Barbara J. Wold
    Angelike Stathopoulos
    First Published March 7, 2011
  - Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm
    Shan-Fu Wu
    Haiying Zhang
    Bradley R. Cairns
    First Published March 7, 2011
  - Coordinated histone modifications are associated with gene expression variation within and between species
    Misook Ha
    Danny W-K. Ng
    Wen-Hsiung Li
    Z. Jeffrey Chen
    First Published February 4, 2011
  - Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes
    Ovidiu Popa
    Einat Hazkani-Covo
    Giddy Landan
    William Martin
    Tal Dagan
    First Published January 26, 2011
Methods
- - Multiplexed shotgun genotyping for rapid and efficient genetic mapping
    Peter Andolfatto
    Dan Davison
    Deniz Erezyilmaz
    Tina T. Hu
    Joshua Mast
    First Published January 13, 2011
  - Sequence-based physical mapping of complex genomes by whole genome profiling
    Jan van Oeveren
    Marjo de Ruiter
    Taco Jesse
    Hein van der Poel
    Jifeng Tang
    Feyruz Yalcin Antoine Janssen Hanne Volpin
    ...[+3 authors]...,
    Keith E. Stormo
    Robert Bogden
    Michiel J.T. van Eijk
    Marcel Prins
    First Published February 1, 2011
  - Biome representational in silico karyotyping
    Valliammai Muthappan
    Aaron Y. Lee
    Tamara L. Lamprecht
    Lakshmi Akileswaran
    Suzanne M. Dintzis
    Choli Lee
    ...[+1 authors]...,
    Vincent Magrini
    Elaine R. Mardis
    Jay Shendure
    Russell N. Van Gelder
    First Published February 10, 2011
  - Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
    Xiaohan Yang
    Timothy J. Tschaplinski
    Gregory B. Hurst
    Sara Jawdy
    Paul E. Abraham
    Patricia K. Lankford Rachel M. Adams Manesh B. Shah Robert L. Hettich Erika Lindquist
    ...[+5 authors]...,
    Udaya C. Kalluri
    Lee E. Gunter
    Christa Pennacchio
    Gerald A. Tuskan
    First Published March 2, 2011

Table of Contents

Volume 21, Issue 4 | April 2011

Research

RAF gene fusion breakpoints in pediatric brain tumors are characterized by significant enrichment of sequence microhomology

Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors

Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles

Recurrence, submicroscopic complexity, and potential clinical relevance of copy gains detected by array CGH that are shown to be unbalanced insertions by FISH

RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression

Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers

High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation

Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm

Coordinated histone modifications are associated with gene expression variation within and between species

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

Methods

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

Sequence-based physical mapping of complex genomes by whole genome profiling

Biome representational in silico karyotyping

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches

Table of Contents

Volume 21, Issue 4 | April 2011

Share this issue

Research

Methods