Volume 20, Issue 5 | May 2010

Perspective
- - Neanderthal genomics and the evolution of modern humans
    James P. Noonan
    First Published May 3, 2010
Research
- - The effect of translocation-induced nuclear reorganization on gene expression
    Louise Harewood
    Frédéric Schütz
    Shelagh Boyle
    Paul Perry
    Mauro Delorenzi
    First Published March 8, 2010
  - Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
    Valer Gotea
    Axel Visel
    John M. Westlund
    Marcelo A. Nobrega
    Len A. Pennacchio
    First Published April 2, 2010
  - A CTCF-independent role for cohesin in tissue-specific transcription
    Dominic Schmidt
    Petra C. Schwalie
    Caryn S. Ross-Innes
    Antoni Hurtado
    Gordon D. Brown
    First Published March 10, 2010
  - Reprogramming of miRNA networks in cancer and leukemia
    Stefano Volinia
    Marco Galasso
    Stefan Costinean
    Luca Tagliavini
    Giacomo Gamberoni
    Alessandra Drusco Jlenia Marchesini Nicoletta Mascellani Maria Elena Sana Ramzey Abu Jarour Caroline Desponts Michael Teitell Raffaele Baffa Rami Aqeilan Marilena V. Iorio Cristian Taccioli Ramiro Garzon Gianpiero Di Leva Muller Fabbri Marco Catozzi Maurizio Previati Stefan Ambs Tiziana Palumbo Michela Garofalo Angelo Veronese Arianna Bottoni Pierluigi Gasparini Curtis C. Harris Rosa Visone Yuri Pekarsky Albert de la Chapelle Mark Bloomston Mary Dillhoff Laura Z. Rassenti Thomas J. Kipps Kay Huebner Flavia Pichiorri Dido Lenze Stefano Cairo Marie-Annick Buendia Pascal Pineau Anne Dejean Nicola Zanesi Simona Rossi George A. Calin Chang-Gong Liu Jeff Palatini
    ...[+42 authors]...,
    Massimo Negrini
    Andrea Vecchione
    Anne Rosenberg
    Carlo M. Croce
    First Published May 3, 2010
  - The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important
    Erika M. Kvikstad
    Kateryna D. Makova
    First Published March 10, 2010
  - Global survey of escape from X inactivation by RNA-sequencing in mouse
    Fan Yang
    Tomas Babak
    Jay Shendure
    Christine M. Disteche
    First Published April 2, 2010
  - Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome
    Aaron R. Quinlan
    Royden A. Clark
    Svetlana Sokolova
    Mitchell L. Leibowitz
    Yujun Zhang
    First Published March 22, 2010
  - High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: Alternative expression modes and gene function correlates
    Jun Matsumoto
    Ken Dewar
    Jessica Wasserscheid
    Graham B. Wiley
    Simone L. Macmil
    First Published March 8, 2010
  - Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
    Guojie Zhang
    Guangwu Guo
    Xueda Hu
    Yong Zhang
    Qiye Li
    Ruiqiang Li Ruhong Zhuang Zhike Lu Zengquan He Xiaodong Fang Li Chen Wei Tian Yong Tao Karsten Kristiansen Xiuqing Zhang
    ...[+10 authors]...,
    Songgang Li
    Huanming Yang
    Jian Wang
    Jun Wang
    First Published March 19, 2010
  - Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities
    Yassina Bechah
    Khalid El Karkouri
    Oleg Mediannikov
    Quentin Leroy
    Nicolas Pelletier
    First Published April 5, 2010
  - mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus
    Matthieu Legendre
    Stéphane Audic
    Olivier Poirot
    Pascal Hingamp
    Virginie Seltzer
    Deborah Byrne Audrey Lartigue Magali Lescot
    ...[+3 authors]...,
    Alain Bernadac
    Julie Poulain
    Chantal Abergel
    Jean-Michel Claverie
    First Published April 1, 2010
Method
- - Genome assembly quality: Assessment and improvement using the neutral indel model
    Stephen Meader
    LaDeana W. Hillier
    Devin Locke
    Chris P. Ponting
    Gerton Lunter
    First Published March 19, 2010
Resource
- - An effective model for natural selection in promoters
    Michael M. Hoffman
    Ewan Birney
    First Published March 1, 2010
  - Analysis of copy number variations among diverse cattle breeds
    George E. Liu
    Yali Hou
    Bin Zhu
    Maria Francesca Cardone
    Lu Jiang
    Angelo Cellamare Apratim Mitra Leeson J. Alexander Luiz L. Coutinho Maria Elena Dell'Aquila Lou C. Gasbarre Gianni Lacalandra Robert W. Li Lakshmi K. Matukumalli Dan Nonneman Luciana C. de A. Regitano Tim P.L. Smith Jiuzhou Song Tad S. Sonstegard Curt P. Van Tassell
    ...[+15 authors]...,
    Mario Ventura
    Evan E. Eichler
    Tara G. McDaneld
    John W. Keele
    First Published March 8, 2010

Table of Contents

Volume 20, Issue 5 | May 2010

Perspective

Neanderthal genomics and the evolution of modern humans

Research

The effect of translocation-induced nuclear reorganization on gene expression

Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers

A CTCF-independent role for cohesin in tissue-specific transcription

Reprogramming of miRNA networks in cancer and leukemia

The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important

Global survey of escape from X inactivation by RNA-sequencing in mouse

Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome

High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: Alternative expression modes and gene function correlates

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

Method

Genome assembly quality: Assessment and improvement using the neutral indel model

Resource

An effective model for natural selection in promoters

Analysis of copy number variations among diverse cattle breeds

Table of Contents

Volume 20, Issue 5 | May 2010

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Perspective

Research

Method

Resource