Volume 17, Issue 2 | February 2007

REVIEW
- - Multiple sequence alignment: In pursuit of homologous DNA positions
    Sudhir Kumar
    Alan Filipski
    First Published February 1, 2007
LETTERS
- - Serum response factor binding sites differ in three human cell types
    Sara J. Cooper
    Nathan D. Trinklein
    Loan Nguyen
    Richard M. Myers
    First Published January 2, 2007
  - Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters
    Daehyun Baek
    Colleen Davis
    Brent Ewing
    David Gordon
    Phil Green
    First Published January 8, 2007
  - Widespread mRNA polyadenylation events in introns indicate dynamic interplay between polyadenylation and splicing
    Bin Tian
    Zhenhua Pan
    Ju Youn Lee
    First Published January 8, 2007
  - Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land
    Peng Shi
    Jianzhi Zhang
    First Published January 8, 2007
  - Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    Takeshi Itoh
    Tsuyoshi Tanaka
    Roberto A. Barrero
    Chisato Yamasaki
    Yasuyuki Fujii
    Phillip B. Hilton Baltazar A. Antonio Hideo Aono Rolf Apweiler Richard Bruskiewich Thomas Bureau Frances Burr Antonio Costa de Oliveira Galina Fuks Takuya Habara Georg Haberer Bin Han Erimi Harada Aiko T. Hiraki Hirohiko Hirochika Douglas Hoen Hiroki Hokari Satomi Hosokawa Yue Hsing Hiroshi Ikawa Kazuho Ikeo Tadashi Imanishi Yukiyo Ito Pankaj Jaiswal Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Hiroaki Kawashima Jitendra P. Khurana Shoshi Kikuchi Setsuko Komatsu Kanako O. Koyanagi Hiromi Kubooka Damien Lieberherr Yao-Cheng Lin David Lonsdale Takashi Matsumoto Akihiro Matsuya W. Richard McCombie Joachim Messing Akio Miyao Nicola Mulder Yoshiaki Nagamura Jongmin Nam Nobukazu Namiki Hisataka Numa Shin Nurimoto Claire O’Donovan Hajime Ohyanagi Toshihisa Okido Satoshi OOta Naoki Osato Lance E. Palmer Francis Quetier Saurabh Raghuvanshi Naomi Saichi Hiroaki Sakai Yasumichi Sakai Katsumi Sakata Tetsuya Sakurai Fumihiko Sato Yoshiharu Sato Heiko Schoof Motoaki Seki Michie Shibata Yuji Shimizu Kazuo Shinozaki Yuji Shinso Nagendra K. Singh Brian Smith-White Jun-ichi Takeda Motohiko Tanino Tatiana Tatusova Supat Thongjuea Fusano Todokoro Mika Tsugane Akhilesh K. Tyagi Apichart Vanavichit Aihui Wang Rod A. Wing Kaori Yamaguchi Mayu Yamamoto Naoyuki Yamamoto Yeisoo Yu Hao Zhang Qiang Zhao
    ...[+86 authors]...,
    Kenichi Higo
    Benjamin Burr
    Takashi Gojobori
    Takuji Sasaki
    First Published January 8, 2007
  - Highly efficient concerted evolution in the ribosomal DNA repeats: Total rDNA repeat variation revealed by whole-genome shotgun sequence data
    Austen R.D. Ganley
    Takehiko Kobayashi
    First Published January 2, 2007
  - Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer
    Timothy P. Stinear
    Torsten Seemann
    Sacha Pidot
    Wafa Frigui
    Gilles Reysset
    Thierry Garnier Guillaume Meurice David Simon Christiane Bouchier Laurence Ma Magali Tichit Jessica L. Porter Janine Ryan Paul D.R. Johnson John K. Davies Grant A. Jenkin Pamela L.C. Small Louis M. Jones Fredj Tekaia
    ...[+14 authors]...,
    Françoise Laval
    Mamadou Daffé
    Julian Parkhill
    Stewart T. Cole
    First Published January 8, 2007
Methods
- - Predicting tissue-specific enhancers in the human genome
    Len A. Pennacchio
    Gabriela G. Loots
    Marcelo A. Nobrega
    Ivan Ovcharenko
    First Published January 8, 2007
  - A tale of two templates: Automatically resolving double traces has many applications, including efficient PCR-based elucidation of alternative splices
    Aaron E. Tenney
    Jia Qian Wu
    Laura Langton
    Paul Klueh
    Ralph Quatrano
    First Published January 8, 2007
  - Evidence for large inversion polymorphisms in the human genome from HapMap data
    Vikas Bansal
    Ali Bashir
    Vineet Bafna
    First Published December 21, 2006
  - Improving gene annotation using peptide mass spectrometry
    Stephen Tanner
    Zhouxin Shen
    Julio Ng
    Liliana Florea
    Roderic Guigó
    First Published December 22, 2006
  - Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
    Michael R. Miller
    Joseph P. Dunham
    Angel Amores
    William A. Cresko
    Eric A. Johnson
    First Published December 22, 2006
RESOURCE
- - Molecular refinement of gibbon genome rearrangements
    Roberta Roberto
    Oronzo Capozzi
    Richard K. Wilson
    Elaine R. Mardis
    Mariana Lomiento
    Eray Tuzun Ze Cheng
    ...[+2 authors]...,
    Alan R. Mootnick
    Nicoletta Archidiacono
    Mariano Rocchi
    Evan E. Eichler
    First Published December 21, 2006

Table of Contents

Volume 17, Issue 2 | February 2007

REVIEW

Multiple sequence alignment: In pursuit of homologous DNA positions

LETTERS

Serum response factor binding sites differ in three human cell types

Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters

Widespread mRNA polyadenylation events in introns indicate dynamic interplay between polyadenylation and splicing

Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

Highly efficient concerted evolution in the ribosomal DNA repeats: Total rDNA repeat variation revealed by whole-genome shotgun sequence data

Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer

Methods

Predicting tissue-specific enhancers in the human genome

A tale of two templates: Automatically resolving double traces has many applications, including efficient PCR-based elucidation of alternative splices

Evidence for large inversion polymorphisms in the human genome from HapMap data

Improving gene annotation using peptide mass spectrometry

Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers

RESOURCE

Molecular refinement of gibbon genome rearrangements

Table of Contents

Volume 17, Issue 2 | February 2007

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REVIEW

LETTERS

Methods

RESOURCE