Table of Contents

September 2006; 16 (9)

LETTERS

  • Human embryonic stem cells have a unique epigenetic signature

    • Marina Bibikova,
    • Eugene Chudin,
    • Bonnie Wu,
    • Lixin Zhou,
    • Eliza Wickham Garcia,
    • Ying Liu,
    • Soojung Shin,
    • Todd W. Plaia,
    • Jonathan M. Auerbach,
    • Dan E. Arking,
    • Rodolfo Gonzalez,
    • Jeremy Crook,
    • Bruce Davidson,
    • Thomas C. Schulz,
    • Allan Robins,
    • Aparna Khanna,
    • Peter Sartipy,
    • Johan Hyllner,
    • Padmavathy Vanguri,
    • Smita Savant-Bhonsale,
    • Alan K. Smith,
    • Aravinda Chakravarti,
    • Anirban Maitra,
    • Mahendra Rao,
    • David L. Barker,
    • Jeanne F. Loring,
    • and Jian-Bing Fan
    Genome Res. September 2006 16: 1075-1083; Published in Advance August 9, 2006, doi:10.1101/gr.5319906
    OPEN ACCESS ARTICLE

  • An ~140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival

    • John C. Fyfe,
    • Marilyn Menotti-Raymond,
    • Victor A. David,
    • Lars Brichta,
    • Alejandro A. Schäffer,
    • Richa Agarwala,
    • William J. Murphy,
    • William J. Wedemeyer,
    • Brittany L. Gregory,
    • Bethany G. Buzzell,
    • Meghan C. Drummond,
    • Brunhilde Wirth,
    • and Stephen J. O'Brien
    Genome Res. September 2006 16: 1084-1090; Published in Advance August 9, 2006, doi:10.1101/gr.5268806

  • Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events

    • Olga Zhaxybayeva,
    • J. Peter Gogarten,
    • Robert L. Charlebois,
    • W. Ford Doolittle,
    • and R. Thane Papke
    Genome Res. September 2006 16: 1099-1108; Published in Advance August 9, 2006, doi:10.1101/gr.5322306

  • Hemizygous subtelomeres of an African trypanosome chromosome may account for over 75% of chromosome length

    • Sergio Callejas,
    • Vanessa Leech,
    • Christopher Reitter,
    • and Sara Melville
    Genome Res. September 2006 16: 1109-1118; Published in Advance August 9, 2006, doi:10.1101/gr.5147406

  • Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii

    • Asis Khan,
    • Ulrike Böhme,
    • Krystyna A. Kelly,
    • Ellen Adlem,
    • Karen Brooks,
    • Mark Simmonds,
    • Karen Mungall,
    • Michael A. Quail,
    • Claire Arrowsmith,
    • Tracey Chillingworth,
    • Carol Churcher,
    • David Harris,
    • Matthew Collins,
    • Nigel Fosker,
    • Audrey Fraser,
    • Zahra Hance,
    • Kay Jagels,
    • Sharon Moule,
    • Lee Murphy,
    • Susan O'Neil,
    • Marie-Adele Rajandream,
    • David Saunders,
    • Kathy Seeger,
    • Sally Whitehead,
    • Thomas Mayr,
    • Xuenan Xuan,
    • Junichi Watanabe,
    • Yutaka Suzuki,
    • Hiroyuki Wakaguri,
    • Sumio Sugano,
    • Chihiro Sugimoto,
    • Ian Paulsen,
    • Aaron J. Mackey,
    • David S. Roos,
    • Neil Hall,
    • Matthew Berriman,
    • Bart Barrell,
    • L. David Sibley,
    • and James W. Ajioka
    Genome Res. September 2006 16: 1119-1125; Published in Advance August 10, 2006, doi:10.1101/gr.5318106

Methods

  • Predicting essential genes in fungal genomes

    • Michael Seringhaus,
    • Alberto Paccanaro,
    • Anthony Borneman,
    • Michael Snyder,
    • and Mark Gerstein
    Genome Res. September 2006 16: 1126-1135; Published in Advance August 9, 2006, doi:10.1101/gr.5144106
    OPEN ACCESS ARTICLE

  • High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping

    • Daniel A. Peiffer,
    • Jennie M. Le,
    • Frank J. Steemers,
    • Weihua Chang,
    • Tony Jenniges,
    • Francisco Garcia,
    • Kirt Haden,
    • Jiangzhen Li,
    • Chad A. Shaw,
    • John Belmont,
    • Sau Wai Cheung,
    • Richard M. Shen,
    • David L. Barker,
    • and Kevin L. Gunderson
    Genome Res. September 2006 16: 1136-1148; Published in Advance August 9, 2006, doi:10.1101/gr.5402306
    OPEN ACCESS ARTICLE

  • STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments

    • Sharon J. Diskin,
    • Thomas Eck,
    • Joel Greshock,
    • Yael P. Mosse,
    • Tara Naylor,
    • Christian J. Stoeckert, Jr.,
    • Barbara L. Weber,
    • John M. Maris,
    • and Gregory R. Grant
    Genome Res. September 2006 16: 1149-1158; Published in Advance August 9, 2006, doi:10.1101/gr.5076506
    OPEN ACCESS ARTICLE

  • SyMAP: A system for discovering and viewing syntenic regions of FPC maps

    • Carol Soderlund,
    • William Nelson,
    • Austin Shoemaker,
    • and Andrew Paterson
    Genome Res. September 2006 16: 1159-1168; doi:10.1101/gr.5396706
    OPEN ACCESS ARTICLE

  • Græmlin: General and robust alignment of multiple large interaction networks

    • Jason Flannick,
    • Antal Novak,
    • Balaji S. Srinivasan,
    • Harley H. McAdams,
    • and Serafim Batzoglou
    Genome Res. September 2006 16: 1169-1181; Published in Advance August 9, 2006, doi:10.1101/gr.5235706
    OPEN ACCESS ARTICLE

RESOURCE

  • An initial map of insertion and deletion (INDEL) variation in the human genome

    • Ryan E. Mills,
    • Christopher T. Luttig,
    • Christine E. Larkins,
    • Adam Beauchamp,
    • Circe Tsui,
    • W. Stephen Pittard,
    • and Scott E. Devine
    Genome Res. September 2006 16: 1182-1190; Published in Advance August 10, 2006, doi:10.1101/gr.4565806
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This Issue

September 2006; 16 (9)
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  1. LETTERS
  2. Methods
  3. RESOURCE

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