Table of Contents

June 2006; 16 (6)

LETTERS

  • Variants in the GH-IGF axis confer susceptibilityto lung cancer

    • Matthew F. Rudd,
    • Emily L. Webb,
    • Athena Matakidou,
    • Gabrielle S. Sellick,
    • Richard D. Williams,
    • Helen Bridle,
    • Tim Eisen,
    • Richard S. Houlston,
    • and the GELCAPS Consortium
    Genome Res. June 2006 16: 693-701; doi:10.1101/gr.5120106

  • How reliable are empirical genomic scans for selective sweeps?

    • Kosuke M. Teshima,
    • Graham Coop,
    • and Molly Przeworski
    Genome Res. June 2006 16: 702-712; Published in Advance May 10, 2006, doi:10.1101/gr.5105206

  • Evolutionary turnover of mammalian transcription start sites

    • Martin C. Frith,
    • Jasmina Ponjavic,
    • David Fredman,
    • Chikatoshi Kai,
    • Jun Kawai,
    • Piero Carninci,
    • Yoshihide Hayshizaki,
    • and Albin Sandelin
    Genome Res. June 2006 16: 713-722; Published in Advance May 10, 2006, doi:10.1101/gr.5031006

  • An epigenetic state associated with areas of gene duplication

    • Alexander A. Gimelbrant and
    • Andrew Chess
    Genome Res. June 2006 16: 723-729; Published in Advance May 10, 2006, doi:10.1101/gr.5023706

  • Genomic islands of differentiation between house mouse subspecies

    • Bettina Harr
    Genome Res. June 2006 16: 730-737; Published in Advance May 10, 2006, doi:10.1101/gr.5045006

  • Widespread genome duplications throughout the history of flowering plants

    • Liying Cui,
    • P. Kerr Wall,
    • James H. Leebens-Mack,
    • Bruce G. Lindsay,
    • Douglas E. Soltis,
    • Jeff J. Doyle,
    • Pamela S. Soltis,
    • John E. Carlson,
    • Kathiravetpilla Arumuganathan,
    • Abdelali Barakat,
    • Victor A. Albert,
    • Hong Ma,
    • and Claude W. dePamphilis
    Genome Res. June 2006 16: 738-749; Published in Advance May 15, 2006, doi:10.1101/gr.4825606

  • Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number

    • Scott William Roy and
    • Daniel L. Hartl
    Genome Res. June 2006 16: 750-756; Published in Advance May 15, 2006, doi:10.1101/gr.4845406

  • Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms

    • Wei Zhang,
    • Weihong Qi,
    • Thomas J. Albert,
    • Alifiya S. Motiwala,
    • David Alland,
    • Eija K. Hyytia-Trees,
    • Efrain M. Ribot,
    • Patricia I. Fields,
    • Thomas S. Whittam,
    • and Bala Swaminathan
    Genome Res. June 2006 16: 757-767; Published in Advance April 10, 2006, doi:10.1101/gr.4759706

Methods

  • Physical map-assisted whole-genome shotgun sequence assemblies

    • René L. Warren,
    • Dmitry Varabei,
    • Darren Platt,
    • Xiaoqiu Huang,
    • David Messina,
    • Shiaw-Pyng Yang,
    • James W. Kronstad,
    • Martin Krzywinski,
    • Wesley C. Warren,
    • John W. Wallis,
    • LaDeana W. Hillier,
    • Asif T. Chinwalla,
    • Jacqueline E. Schein,
    • Asim S. Siddiqui,
    • Marco A. Marra,
    • Richard K. Wilson,
    • and Steven J.M. Jones
    Genome Res. June 2006 16: 768-775; doi:10.1101/gr.5090606

  • ASEtrap: A biological method for speeding up the exploration of spliceomes

    • Gilbert Thill,
    • Vanina Castelli,
    • Sophie Pallud,
    • Marcel Salanoubat,
    • Patrick Wincker,
    • Pierre de la Grange,
    • Didier Auboeuf,
    • Vincent Schächter,
    • and Jean Weissenbach
    Genome Res. June 2006 16: 776-786; Published in Advance May 8, 2006, doi:10.1101/gr.5063306

  • High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis

    • Marilyn A.L. West,
    • Hans van Leeuwen,
    • Alexander Kozik,
    • Daniel J. Kliebenstein,
    • R.W. Doerge,
    • Dina A. St. Clair,
    • and Richard W. Michelmore
    Genome Res. June 2006 16: 787-795; Published in Advance May 15, 2006, doi:10.1101/gr.5011206
    OPEN ACCESS ARTICLE

RESOURCE

  • Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

    • Ryan D. Morin,
    • Elbert Chang,
    • Anca Petrescu,
    • Nancy Liao,
    • Malachi Griffith,
    • Robert Kirkpatrick,
    • Yaron S. Butterfield,
    • Alice C. Young,
    • Jeffrey Stott,
    • Sarah Barber,
    • Ryan Babakaiff,
    • Mark C. Dickson,
    • Corey Matsuo,
    • David Wong,
    • George S. Yang,
    • Duane E. Smailus,
    • Keith D. Wetherby,
    • Peggy N. Kwong,
    • Jane Grimwood,
    • Charles P. Brinkley III,
    • Mabel Brown-John,
    • Natalie D. Reddix-Dugue,
    • Michael Mayo,
    • Jeremy Schmutz,
    • Jaclyn Beland,
    • Morgan Park,
    • Susan Gibson,
    • Teika Olson,
    • Gerard G. Bouffard,
    • Miranda Tsai,
    • Ruth Featherstone,
    • Steve Chand,
    • Asim S. Siddiqui,
    • Wonhee Jang,
    • Ed Lee,
    • Steven L. Klein,
    • Robert W. Blakesley,
    • Barry R. Zeeberg,
    • Sudarshan Narasimhan,
    • John N. Weinstein,
    • Christa Prange Pennacchio,
    • Richard M. Myers,
    • Eric D. Green,
    • Lukas Wagner,
    • Daniela S. Gerhard,
    • Marco A. Marra,
    • Steven J.M. Jones,
    • and Robert A. Holt
    Genome Res. June 2006 16: 796-803; Published in Advance May 3, 2006, doi:10.1101/gr.4871006

ERRATUM

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This Issue

June 2006; 16 (6)
Cover
  1. LETTERS
  2. Methods
  3. RESOURCE
  4. ERRATUM

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