Volume 16, Issue 1 | January 2006

ARTICLES
- - Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome
    Sara J. Cooper
    Nathan D. Trinklein
    Elizabeth D. Anton
    Loan Nguyen
    Richard M. Myers
    First Published December 12, 2005
  - Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
    Timothy Ravasi
    Harukazu Suzuki
    Ken C. Pang
    Shintaro Katayama
    Masaaki Furuno
    Rie Okunishi Shiro Fukuda Kelin Ru Martin C. Frith M. Milena Gongora
    ...[+5 authors]...,
    Sean M. Grimmond
    David A. Hume
    Yoshihide Hayashizaki
    John S. Mattick
    First Published December 12, 2005
  - Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression
    Wei Deng
    Xiaopeng Zhu
    Geir Skogerbø
    Yi Zhao
    Zhuo Fu
    Yudong Wang Housheng He Lun Cai Hong Sun Changning Liu Biao Li Baoyan Bai Jie Wang Dong Jia Shiwei Sun Hang He
    ...[+11 authors]...,
    Yan Cui
    Yu Wang
    Dongbo Bu
    Runsheng Chen
    First Published December 12, 2005
LETTERS
- - Transcription-mediated gene fusion in the human genome
    Pinchas Akiva
    Amir Toporik
    Sarit Edelheit
    Yifat Peretz
    Alex Diber
    First Published December 12, 2005
  - Tandem chimerism as a means to increase protein complexity in the human genome
    Genís Parra
    Alexandre Reymond
    Noura Dabbouseh
    Emmanouil T. Dermitzakis
    Robert Castelo
    First Published December 12, 2005
  - Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22
    Leonard Lipovich
    Mary-Claire King
    First Published December 12, 2005
  - Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
    Kouichi Kimura
    Ai Wakamatsu
    Yutaka Suzuki
    Toshio Ota
    Tetsuo Nishikawa
    Riu Yamashita Jun-ichi Yamamoto Mitsuo Sekine Katsuki Tsuritani Hiroyuki Wakaguri Shizuko Ishii Tomoyasu Sugiyama Kaoru Saito Yuko Isono Ryotaro Irie Norihiro Kushida Takahiro Yoneyama Rie Otsuka Katsuhiro Kanda Takahide Yokoi Hiroshi Kondo Masako Wagatsuma Katsuji Murakawa Shinichi Ishida Tadashi Ishibashi Asako Takahashi-Fujii Tomoo Tanase Keiichi Nagai
    ...[+23 authors]...,
    Hisashi Kikuchi
    Kenta Nakai
    Takao Isogai
    Sumio Sugano
    First Published December 12, 2005
  - Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion
    Nuno L. Barbosa-Morais
    Maria Carmo-Fonseca
    Samuel Aparício
    First Published December 12, 2005
  - Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
    Hameed Khan
    Arian Smit
    Stéphane Boissinot
    First Published December 12, 2005
  - The evolutionary dynamics of α-satellite
    M. Katharine Rudd
    Gregory A. Wray
    Huntington F. Willard
    First Published December 12, 2005
  - A missense mutation in the bovine SLC35A3 gene, encoding a UDP-N-acetylglucosamine transporter, causes complex vertebral malformation
    Bo Thomsen
    Per Horn
    Frank Panitz
    Emøke Bendixen
    Anette H. Petersen
    Lars-Erik Holm
    ...[+1 authors]...,
    Vivi H. Nielsen
    Jørgen S. Agerholm
    Jens Arnbjerg
    Christian Bendixen
    First Published December 12, 2005
  - Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination “hot spots”
    Jan Drouaud
    Christine Camilleri
    Pierre-Yves Bourguignon
    Aurélie Canaguier
    Aurélie Bérard
    Daniel Vezon Sandra Giancola Dominique Brunel
    ...[+3 authors]...,
    Vincent Colot
    Bernard Prum
    Hadi Quesneville
    Christine Mézard
    First Published December 12, 2005
  - Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes
    Lorinda K. Anderson
    Ann Lai
    Stephen M. Stack
    Carene Rizzon
    Brandon S. Gaut
    First Published December 7, 2005
Methods
- - Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
    Gregory E. Crawford
    Ingeborg E. Holt
    James Whittle
    Bryn D. Webb
    Denise Tai
    Sean Davis Elliott H. Margulies YiDong Chen John A. Bernat David Ginsburg Daixing Zhou Shujun Luo
    ...[+7 authors]...,
    Thomas J. Vasicek
    Mark J. Daly
    Tyra G. Wolfsberg
    Francis S. Collins
    First Published December 12, 2005
  - Development of a microscopic platform for real-time monitoring of biomolecular interactions
    Yasuhiro Sasuga
    Tomomi Tani
    Masahito Hayashi
    Hisashi Yamakawa
    Osamu Ohara
    First Published December 12, 2005
RESOURCE
- - The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza
    Jetty S.S. Ammiraju
    Meizhong Luo
    José L. Goicoechea
    Wenming Wang
    Dave Kudrna
    Christopher Mueller Jayson Talag HyeRan Kim Nicholas B. Sisneros Barbara Blackmon Eric Fang Jeffery B. Tomkins Darshan Brar David MacKill Susan McCouch Nori Kurata Georgina Lambert David W. Galbraith K. Arumuganathan Kiran Rao Jason G. Walling Navdeep Gill Yeisoo Yu
    ...[+18 authors]...,
    Phillip SanMiguel
    Carol Soderlund
    Scott Jackson
    Rod A. Wing
    First Published December 12, 2005

Table of Contents

Volume 16, Issue 1 | January 2006

ARTICLES

Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression

LETTERS

Transcription-mediated gene fusion in the human genome

Tandem chimerism as a means to increase protein complexity in the human genome

Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion

Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates

The evolutionary dynamics of α-satellite

A missense mutation in the bovine SLC35A3 gene, encoding a UDP-N-acetylglucosamine transporter, causes complex vertebral malformation

Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination “hot spots”

Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes

Methods

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

Development of a microscopic platform for real-time monitoring of biomolecular interactions

RESOURCE

The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

Table of Contents

Volume 16, Issue 1 | January 2006

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ARTICLES

LETTERS

Methods

RESOURCE