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  Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes

  • Floyd A. Reed,
  • Joshua M. Akey,
  • and Charles F. Aquadro

  Genome Res. September 2005 15: 1211-1221; doi:10.1101/gr.3413205
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  Why do human diversity levels vary at a megabase scale?

  • Ines Hellmann,
  • Kay Prüfer,
  • Hongkai Ji,
  • Michael C. Zody,
  • Svante Pääbo,
  • and Susan E. Ptak

  Genome Res. September 2005 15: 1222-1231; doi:10.1101/gr.3461105
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  • [The Chimpanzee Genome]

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  Independent intrachromosomal recombination events underlie the pericentric inversions of chimpanzee and gorilla chromosomes homologous to human chromosome 16

  • Violaine Goidts,
  • Justyna M. Szamalek,
  • Pieter J. de Jong,
  • David N. Cooper,
  • Nadia Chuzhanova,
  • Horst Hameister,
  • and Hildegard Kehrer-Sawatzki

  Genome Res. September 2005 15: 1232-1242; doi:10.1101/gr.3732505
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  • [The Chimpanzee Genome]
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  Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates

  • Louie N. van de Lagemaat,
  • Liane Gagnier,
  • Patrik Medstrand,
  • and Dixie L. Mager

  Genome Res. September 2005 15: 1243-1249; doi:10.1101/gr.3910705
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  • [The Chimpanzee Genome]
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  Ancient haplotypes of the HLA Class II region

  • Christopher K. Raymond,
  • Arnold Kas,
  • Marcia Paddock,
  • Ruolan Qiu,
  • Yang Zhou,
  • Sandhya Subramanian,
  • Jean Chang,
  • Anthony Palmieri,
  • Eric Haugen,
  • Rajinder Kaul,
  • and Maynard V. Olson

  Genome Res. September 2005 15: 1250-1257; doi:10.1101/gr.3554305
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  Origin and evolution of new exons in rodents

  • Wen Wang,
  • Hongkun Zheng,
  • Shuang Yang,
  • Haijing Yu,
  • Jun Li,
  • Huifeng Jiang,
  • Jianning Su,
  • Lei Yang,
  • Jianguo Zhang,
  • Jason McDermott,
  • Ram Samudrala,
  • Jian Wang,
  • Huanming Yang,
  • Jun Yu,
  • Karsten Kristiansen,
  • Gane Ka-Shu Wong,
  • and Jun Wang

  Genome Res. September 2005 15: 1258-1264; Published in Advance August 18, 2005, doi:10.1101/gr.3929705
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  Genome-wide HP1 binding in Drosophila: Developmental plasticity and genomic targeting signals

  • Elzo de Wit,
  • Frauke Greil,
  • and Bas van Steensel

  Genome Res. September 2005 15: 1265-1273; Published in Advance August 18, 2005, doi:10.1101/gr.3198905
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  A microarray analysis of the rice transcriptome and its comparison to Arabidopsis

  • Ligeng Ma,
  • Chen Chen,
  • Xigang Liu,
  • Yuling Jiao,
  • Ning Su,
  • Lin Li,
  • Xiangfeng Wang,
  • Mengliang Cao,
  • Ning Sun,
  • Xiuqing Zhang,
  • Jingyue Bao,
  • Jian Li,
  • Soren Pedersen,
  • Lars Bolund,
  • Hongyu Zhao,
  • Longping Yuan,
  • Gane Ka-Shu Wong,
  • Jun Wang,
  • Xing Wang Deng,
  • and Jian Wang

  Genome Res. September 2005 15: 1274-1283; doi:10.1101/gr.3657405
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  Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

  Genome Res. September 2005 15: 1284-1291; Published in Advance August 18, 2005, doi:10.1101/gr.3869505
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  The evolutionary fate of MULE-mediated duplications of host gene fragments in rice

  • Nikoleta Juretic,
  • Douglas R. Hoen,
  • Michael L. Huynh,
  • Paul M. Harrison,
  • and Thomas E. Bureau

  Genome Res. September 2005 15: 1292-1297; doi:10.1101/gr.4064205
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