Impact of genomics on research in the rat

Table 1.

List of major rat resources

Database
Data type
References
URL
Rat Genome Database (RGD) Several Twigger et al. 2005 http://rgd.mcw.edu
RatMap Several Petersen et al. 2005 http://ratmap.gen.gu.se
NCBI Rat Genome Resources Several http://www.ncbi.nlm.nih.gov/genome/guide/rat/index.html
UCSC Rat Browser Several Karolchik et al. 2003 http://genome.brc.mcw.edu/
Ensembl Rat Browser Several Hubbard et al. 2005 http://www.ensembl.org/Rattus_norvegicus/index.html
Baylor College of Medicine Rat Resources Sequence, contigs, assembly Gibbs et al. 2004 http://www.hgsc.bcm.tmc.edu/projects/rat/
Rat EST Project at the University of Iowa Rat ESTs Scheetz et al. 2004 http://ratest.uiowa.edu/
PhysGen Program for Genomics Applications (PGA) Strains, phenotypes, genotypes Jacob and Kwitek 2002 http://pga.mcw.edu
National Bio Resource Project Japan Strains, phenotypes, genotypes Mashimo et al. 2005 http://www.anim.med.kyoto-u.ac.jp/nbr/
TIGR Program for Genomics Applications (TREX) Microarray http://pga.tigr.org/
NIAMS: ARB Rat Genetic Database Strains, maps, markers Dracheva et al. 2000 http://www.niams.nih.gov/rtbc/ratgbase/
Wellcome Trust Centre: Rat Mapping Resources Maps, markers Wilder et al. 2004 http://www.well.ox.ac.uk/rat_mapping_resources/
RRRC: Rat Resource and Research Center Strains http://www.nrrrc.missouri.edu/
TIGR Gene Index Genes Lee et al. 2005 http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=rat
ECR Comparative Genome Browser Comparative genomics Ovcharenko et al. 2004 http://ecrbrowser.dcode.org/index.php?db=rn3
VISTA: Comparative Sequence Alignment Browser Comparative genomics Frazer et al. 2004 http://pipeline.lbl.gov/cgi-bin/gateway2?bg=rn3&selector=vista
LONI Rat Atlas Image Database
Anatomy
Toga et al. 1995
http://www.loni.ucla.edu/Research/Atlases/RatAtlas.html

This Article

  1. Genome Res. 15: 1717-1728

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research