Table of Contents

September 2004; 14 (9)

LETTERS

  • Evidence for Gradients of Human Genetic Diversity Within and Among Continents

    • David Serre and
    • Svante Pääbo
    Genome Res. September 2004 14: 1679-1685; doi:10.1101/gr.2529604

  • Comparative Analysis of Apicomplexa and Genomic Diversity in Eukaryotes

    • Thomas J. Templeton,
    • Lakshminarayan M. Iyer,
    • Vivek Anantharaman,
    • Shinichiro Enomoto,
    • Juan E. Abrahante,
    • G.M. Subramanian,
    • Stephen L. Hoffman,
    • Mitchell S. Abrahamsen,
    • and L. Aravind
    Genome Res. September 2004 14: 1686-1695; doi:10.1101/gr.2615304

  • Recurrent Sites for New Centromere Seeding

    • Mario Ventura,
    • Stefania Weigl,
    • Lucia Carbone,
    • Maria Francesca Cardone,
    • Doriana Misceo,
    • Mariagrazia Teti,
    • Pietro D'Addabbo,
    • Annelise Wandall,
    • Erik Björck,
    • Pieter J. de Jong,
    • Xinwei She,
    • Evan E. Eichler,
    • Nicoletta Archidiacono,
    • and Mariano Rocchi
    Genome Res. September 2004 14: 1696-1703; doi:10.1101/gr.2608804

  • Insertion of Telomeric Repeats at Intrachromosomal Break Sites During Primate Evolution

    • Solomon G. Nergadze,
    • Mariano Rocchi,
    • Claus M. Azzalin,
    • Chiara Mondello,
    • and Elena Giulotto
    Genome Res. September 2004 14: 1704-1710; Published in Advance August 12, 2004, doi:10.1101/gr.2778904

  • Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions

    • Yutaka Suzuki,
    • Riu Yamashita,
    • Matsuyuki Shirota,
    • Yuta Sakakibara,
    • Joe Chiba,
    • Junko Mizushima-Sugano,
    • Kenta Nakai,
    • and Sumio Sugano
    Genome Res. September 2004 14: 1711-1718; doi:10.1101/gr.2435604

  • Widespread RNA Editing of Embedded Alu Elements in the Human Transcriptome

    • Dennis D.Y. Kim,
    • Thomas T.Y. Kim,
    • Thomas Walsh,
    • Yoshifumi Kobayashi,
    • Tara C. Matise,
    • Steven Buyske,
    • and Abram Gabriel
    Genome Res. September 2004 14: 1719-1725; doi:10.1101/gr.2855504

  • Phylogenetic Footprint Analysis of IGF2 in Extant Mammals

    • Jennifer R. Weidman,
    • Susan K. Murphy,
    • Catherine M. Nolan,
    • Fred S. Dietrich,
    • and Randy L. Jirtle
    Genome Res. September 2004 14: 1726-1732; doi:10.1101/gr.2774804

  • Preference of DNA Methyltransferases for CpG Islands in Mouse Embryonic Stem Cells

    • Naka Hattori,
    • Tetsuya Abe,
    • Naoko Hattori,
    • Masako Suzuki,
    • Tomoki Matsuyama,
    • Shigeo Yoshida,
    • En Li,
    • and Kunio Shiota
    Genome Res. September 2004 14: 1733-1740; Published in Advance August 12, 2004, doi:10.1101/gr.2431504

  • A Large Imprinted microRNA Gene Cluster at the Mouse Dlk1-Gtl2 Domain

    • Hervé Seitz,
    • Hélène Royo,
    • Marie-Line Bortolin,
    • Shau-Ping Lin,
    • Anne C. Ferguson-Smith,
    • and Jérôme Cavaillé
    Genome Res. September 2004 14: 1741-1748; Published in Advance August 12, 2004, doi:10.1101/gr.2743304

Methods

  • Role of Excess Inorganic Pyrophosphate in Primer-Extension Genotyping Assays

    • Ming Xiao,
    • Angie Phong,
    • Kristen L. Lum,
    • Richard A. Greene,
    • Philip R. Buzby,
    • and Pui-Yan Kwok
    Genome Res. September 2004 14: 1749-1755; Published in Advance August 12, 2004, doi:10.1101/gr.2833204

  • EGPred: Prediction of Eukaryotic Genes Using Ab Initio Methods After Combining With Sequence Similarity Approaches

    • Biju Issac and
    • Gajendra Pal Singh Raghava
    Genome Res. September 2004 14: 1756-1766; doi:10.1101/gr.2524704

  • Haplotype Analysis in Multiple Crosses to Identify a QTL Gene

    • Xiaosong Wang,
    • Ron Korstanje,
    • David Higgins,
    • and Beverly Paigen
    Genome Res. September 2004 14: 1767-1772; Published in Advance August 12, 2004, doi:10.1101/gr.2668204

  • A Benchmark for Methods in Reverse Engineering and Model Discrimination: Problem Formulation and Solutions

    • Andreas Kremling,
    • Sophia Fischer,
    • Kapil Gadkar,
    • Francis J. Doyle,
    • Thomas Sauter,
    • Eric Bullinger,
    • Frank Allgöwer,
    • and Ernst D. Gilles
    Genome Res. September 2004 14: 1773-1785; doi:10.1101/gr.1226004

  • De Novo Repeat Classification and Fragment Assembly

    • Paul A. Pevzner,
    • Haixu Tang,
    • and Glenn Tesler
    Genome Res. September 2004 14: 1786-1796; doi:10.1101/gr.2395204

  • Genome-Scale In Silico Models of E. coli Have Multiple Equivalent Phenotypic States: Assessment of Correlated Reaction Subsets That Comprise Network States

    • Jennifer L. Reed and
    • Bernhard Ø. Palsson
    Genome Res. September 2004 14: 1797-1805; doi:10.1101/gr.2546004

RESOURCES

  • An Efficient SNP System for Mouse Genome Scanning and Elucidating Strain Relationships

    • Petko M. Petkov,
    • Yueming Ding,
    • Megan A. Cassell,
    • Weidong Zhang,
    • Gunjan Wagner,
    • Evelyn E. Sargent,
    • Steven Asquith,
    • Victor Crew,
    • Kevin A. Johnson,
    • Phil Robinson,
    • Valerie E. Scott,
    • and Michael V. Wiles
    Genome Res. September 2004 14: 1806-1811; doi:10.1101/gr.2825804

  • An SNP Resource for Rice Genetics and Breeding Based on Subspecies Indica and Japonica Genome Alignments

    • F. Alex Feltus,
    • Jun Wan,
    • Stefan R. Schulze,
    • James C. Estill,
    • Ning Jiang,
    • and Andrew H. Paterson
    Genome Res. September 2004 14: 1812-1819; doi:10.1101/gr.2479404

Retraction

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This Issue

September 2004; 14 (9)
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  1. LETTERS
  2. Methods
  3. RESOURCES
  4. Retraction

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