Table 2.
Spectrum of Small Indelsa in the Comparison Between AT and DT Homoeologous BACs of Gossypium hirsutum
|
|
AT Genome |
DT Genome |
||||
|---|---|---|---|---|---|---|
|
|
No. of indels |
bp |
No. of indels |
bp |
||
| 1-10 bp | 210 | 593 | 207 | 489 | ||
| 11-20 bp | 25 | 369 | 34 | 506 | ||
| 21-30 bp | 10 | 260 | 17 | 414 | ||
| 31-40 bp | 8 | 274 | 5 | 239 | ||
| 41-50 bp | 1 | 49 | 8 | 346 | ||
| 51-100 bp | 5 | 353 | 5 | 351 | ||
| 101-200 bp | 4 | 665 | 2 | 321 | ||
| 200-400 bp | 1 | 214 | 1 | 231 | ||
| Small indels | 264 | 2777 | 279 | 2897 | ||
| All indels
|
269
|
19,977
|
286
|
16,009
|
||
-
↵a Indels are binned in multiples of 10 bp because of up to an indel length of 50 bp; the last three bins span 50 bp, 100 bp, and 200 bp, respectively, because of the infrequency of these larger indels in either genome. The last two rows tally totals for the number and amount of sequence accounted for by small indels (<400 bp) and all indels, respectively.
