Volume 13, Issue 8 | August 2003

ARTICLES
- - Integrated Mapping, Chromosomal Sequencing and Sequence Analysis of Cryptosporidium parvum
    Alan T. Bankier
    Helen F. Spriggs
    Berthold Fartmann
    Bernard A. Konfortov
    Martin Madera
    First Published July 17, 2003
  - Tropheryma whipplei Twist: A Human Pathogenic Actinobacteria With a Reduced Genome
    Didier Raoult
    Hiroyuki Ogata
    Stéphane Audic
    Catherine Robert
    Karsten Suhre
    First Published August 5, 2003
LETTERS
- - Natural Genomic Design in Sinorhizobium meliloti: Novel Genomic Architectures
    Xianwu Guo
    Margarita Flores
    Patrick Mavingui
    Sara Isabel Fuentes
    Georgina Hernández
    First Published August 5, 2003
  - Comparative DNA Sequence Analysis of Wheat and Rice Genomes
    Mark E. Sorrells
    Mauricio La Rota
    Catherine E. Bermudez-Kandianis
    Robert A. Greene
    Ramesh Kantety
    Jesse D. Munkvold Miftahudin Ahmed Mahmoud Xuefeng Ma Perry J. Gustafson Lili L. Qi Benjamin Echalier Bikram S. Gill David E. Matthews Gerard R. Lazo Shiaoman Chao Olin D. Anderson Hugh Edwards Anna M. Linkiewicz Jorge Dubcovsky Eduard D. Akhunov Jan Dvorak Deshui Zhang Henry T. Nguyen Junhua Peng Nora L.V. Lapitan Jose L. Gonzalez-Hernandez James A. Anderson Khwaja Hossain Venu Kalavacharla Shahryar F. Kianian Dong-Woog Choi Timothy J. Close Muharrem Dilbirligi Kulvinder S. Gill
    ...[+30 authors]...,
    Camille Steber
    Mary K. Walker-Simmons
    Patrick E. McGuire
    Calvin O. Qualset
    First Published August 5, 2003
  - A Gene Recommender Algorithm to Identify Coexpressed Genes in C. elegans
    Art B. Owen
    Josh Stuart
    Kathy Mach
    Anne M. Villeneuve
    Stuart Kim
    First Published August 5, 2003
  - Prediction of Cell Type-Specific Gene Modules: Identification and Initial Characterization of a Core Set of Smooth Muscle-Specific Genes
    Sven Nelander
    Petter Mostad
    Per Lindahl
    First Published July 17, 2003
  - Allelic Variation in Gene Expression Is Common in the Human Genome
    H. Shuen Lo
    Zhining Wang
    Ying Hu
    Howard H. Yang
    Sheryl Gere
    First Published August 5, 2003
  - Decay Rates of Human mRNAs: Correlation With Functional Characteristics and Sequence Attributes
    Edward Yang
    Erik van Nimwegen
    Mihaela Zavolan
    Nikolaus Rajewsky
    Mark Schroeder
    First Published August 5, 2003
  - A Population Threshold for Functional Polymorphisms
    Gane Ka-Shu Wong
    Zhiyong Yang
    Douglas A. Passey
    Miho Kibukawa
    Marcia Paddock
    First Published August 5, 2003
  - The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals
    William J. Murphy
    Lutz Frönicke
    Stephen J. O'Brien
    Roscoe Stanyon
    First Published July 17, 2003
  - Sequence Divergence Within Transposable Element Families in the Drosophila melanogaster Genome
    Emmanuelle Lerat
    Carène Rizzon
    Christian Biémont
    First Published July 17, 2003
  - Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana
    Stephen I. Wright
    Newton Agrawal
    Thomas E. Bureau
    First Published August 5, 2003
Methods
- - Biopipe: A Flexible Framework for Protocol-Based Bioinformatics Analysis
    Shawn Hoon
    Kiran Kumar Ratnapu
    Jer-ming Chia
    Balamurugan Kumarasamy
    Xiao Juguang
    Michele Clamp
    ...[+1 authors]...,
    Arne Stabenau
    Simon Potter
    Laura Clarke
    Elia Stupka
    First Published July 17, 2003
  - Estimating the Repeat Structure and Length of DNA Sequences Using ℓ-Tuples
    Xiaoman Li
    Michael S. Waterman
    First Published August 5, 2003
  - Dragon Gene Start Finder: An Advanced System for Finding Approximate Locations of the Start of Gene Transcriptional Units
    Vladimir B. Bajic
    Seng Hong Seah
    First Published July 17, 2003
  - Gene Prediction by Spectral Rotation Measure: A New Method for Identifying Protein-Coding Regions
    Daniel Kotlar
    Yizhar Lavner
    First Published July 17, 2003
  - E. coli Selection of Human Genes Encoding Secreted and Membrane Proteins Based on cDNA Fusions to a Leaderless β-Lactamase Reporter
    Ruoying Tan
    Xin Jiang
    Alan Jackson
    Pei Jin
    Junming Yang
    First Published July 17, 2003
  - Detection and Assignment of Mutations and Minihaplotypes in Human DNA Using Peptide Mass Signature Genotyping (PMSG): Application to the Human RDS/Peripherin Gene
    Cheryl A. Telmer
    Adam R. Retchless
    Ashley D. Kinsey
    Yvette Conley
    Brian Rigatti
    First Published August 5, 2003
  - Automated Detection of Informative Combined Effects in Genetic Association Studies of Complex Traits
    Nadia Tahri-Daizadeh
    David-Alexandre Tregouet
    Viviane Nicaud
    Nicolas Manuel
    François Cambien
    First Published August 5, 2003
  - Expanding the Use of Zymography by the Chemical Linkage of Small, Defined Substrates to the Gel Matrix
    Vladimir R. Kaberdin
    Kenneth J. McDowall
    First Published August 5, 2003
RESOURCE
- - A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence
    Denis M. Larkin
    Annelie Everts-van der Wind
    Mark Rebeiz
    Peter A. Schweitzer
    Sharon Bachman
    Cheryl Green Chris L. Wright Edhilvia J. Campos Leslie D. Benson Jennifer Edwards Lei Liu
    ...[+6 authors]...,
    Kazutoyo Osoegawa
    James E. Womack
    Pieter J. de Jong
    Harris A. Lewin
    First Published August 5, 2003
ERRATUM
- - Correction for Volume 13, p. 1111
    First Published August 5, 2003

Table of Contents

Volume 13, Issue 8 | August 2003

ARTICLES

Integrated Mapping, Chromosomal Sequencing and Sequence Analysis of Cryptosporidium parvum

Tropheryma whipplei Twist: A Human Pathogenic Actinobacteria With a Reduced Genome

LETTERS

Natural Genomic Design in Sinorhizobium meliloti: Novel Genomic Architectures

Comparative DNA Sequence Analysis of Wheat and Rice Genomes

A Gene Recommender Algorithm to Identify Coexpressed Genes in C. elegans

Prediction of Cell Type-Specific Gene Modules: Identification and Initial Characterization of a Core Set of Smooth Muscle-Specific Genes

Allelic Variation in Gene Expression Is Common in the Human Genome

Decay Rates of Human mRNAs: Correlation With Functional Characteristics and Sequence Attributes

A Population Threshold for Functional Polymorphisms

The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals

Sequence Divergence Within Transposable Element Families in the Drosophila melanogaster Genome

Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana

Methods

Biopipe: A Flexible Framework for Protocol-Based Bioinformatics Analysis

Estimating the Repeat Structure and Length of DNA Sequences Using ℓ-Tuples

Dragon Gene Start Finder: An Advanced System for Finding Approximate Locations of the Start of Gene Transcriptional Units

Gene Prediction by Spectral Rotation Measure: A New Method for Identifying Protein-Coding Regions

E. coli Selection of Human Genes Encoding Secreted and Membrane Proteins Based on cDNA Fusions to a Leaderless β-Lactamase Reporter

Detection and Assignment of Mutations and Minihaplotypes in Human DNA Using Peptide Mass Signature Genotyping (PMSG): Application to the Human RDS/Peripherin Gene

Automated Detection of Informative Combined Effects in Genetic Association Studies of Complex Traits

Expanding the Use of Zymography by the Chemical Linkage of Small, Defined Substrates to the Gel Matrix

RESOURCE

A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence

ERRATUM

Correction for Volume 13, p. 1111

Table of Contents

Volume 13, Issue 8 | August 2003

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Methods

RESOURCE

ERRATUM