Table of Contents

July 2002; 12 (7)

INSIGHT/OUTLOOK

  • Genomics: More Than the Sum of the Parts

    • Pablo D. Rabinowicz and
    • Ravi Scahidanandam
    Genome Res. July 1, 2002 12: 1015-1016; doi:10.1101/gr.432502

  • Fly Factory

    • Brian Oliver
    Genome Res. July 1, 2002 12: 1017-1018; doi:10.1101/gr.295602

ARTICLE

  • Computation-Based Discovery of Related Transcriptional Regulatory Modules and Motifs Using an Experimentally Validated Combinatorial Model

    • Marc S. Halfon,
    • Yonatan Grad,
    • George M. Church,
    • and Alan M. Michelson
    Genome Res. July 1, 2002 12: 1019-1028; doi:10.1101/gr.228902

LETTERS

  • Lymphopenia in the BB Rat Model of Type 1 Diabetes is Due to a Mutation in a Novel Immune-Associated Nucleotide (Ian)-Related Gene

    • Armand J. MacMurray,
    • Daniel H. Moralejo,
    • Anne E. Kwitek,
    • Elizabeth A. Rutledge,
    • Brian Van Yserloo,
    • Paul Gohlke,
    • Sara J. Speros,
    • Ben Snyder,
    • Jonathan Schaefer,
    • Sabine Bieg,
    • Jianjie Jiang,
    • Ruth A. Ettinger,
    • Jessica Fuller,
    • Terri L. Daniels,
    • Anna Pettersson,
    • Kimberly Orlebeke,
    • Bruce Birren,
    • Howard J. Jacob,
    • Eric S. Lander,
    • and Åke Lernmark
    Genome Res. July 1, 2002 12: 1029-1039; doi:10.1101/gr.412702

  • Profiling Patterned Transcripts in Drosophila Embryos

    • Karl Simin,
    • Anne Scuderi,
    • James Reamey,
    • Diane Dunn,
    • Robert Weiss,
    • James E. Metherall,
    • and Anthea Letsou
    Genome Res. July 1, 2002 12: 1040-1047; doi:10.1101/gr.84402

  • The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes

    • Olivier Lespinet,
    • Yuri I. Wolf,
    • Eugene V. Koonin,
    • and L. Aravind
    Genome Res. July 1, 2002 12: 1048-1059; doi:10.1101/gr.174302

  • Alu-Containing Exons are Alternatively Spliced

    • Rotem Sorek,
    • Gil Ast,
    • and Dan Graur
    Genome Res. July 1, 2002 12: 1060-1067; doi:10.1101/gr.229302

  • Long-Range Heterogeneity at the 3′ Ends of Human mRNAs

    • Christian Iseli,
    • Brian J. Stevenson,
    • Sandro J. de Souza,
    • Helena B. Samaia,
    • Anamaria A. Camargo,
    • Kenneth H. Buetow,
    • Robert L. Strausberg,
    • Andrew J.G. Simpson,
    • Philipp Bucher,
    • and C. Victor Jongeneel
    Genome Res. July 1, 2002 12: 1068-1074; Published in Advance June 18, 2002, doi:10.1101/gr.62002

  • Genome Size Reduction through Illegitimate Recombination Counteracts Genome Expansion in Arabidopsis

    • Katrien M. Devos,
    • James K.M. Brown,
    • and Jeffrey L. Bennetzen
    Genome Res. July 1, 2002 12: 1075-1079; doi:10.1101/gr.132102

  • A Phylogenomic Approach to Bacterial Phylogeny: Evidence of a Core of Genes Sharing a Common History

    • Vincent Daubin,
    • Manolo Gouy,
    • and Guy Perrière
    Genome Res. July 1, 2002 12: 1080-1090; doi:10.1101/gr.187002

  • Transcript Profiling of Functionally Related Groups of Genes During Conditional Differentiation of a Mammalian Cochlear Hair Cell Line

    • Marcelo N. Rivolta,
    • Antony Halsall,
    • Claire M. Johnson,
    • Michael A. Tones,
    • and Matthew C. Holley
    Genome Res. July 1, 2002 12: 1091-1099; doi:10.1101/gr.225602

METHODS

  • High-Throughput Gene Mapping in Caenorhabditis elegans

    • Kathryn A. Swan,
    • Damian E. Curtis,
    • Kathleen B. McKusick,
    • Alexander V. Voinov,
    • Felipa A. Mapa,
    • and Michael R. Cancilla
    Genome Res. July 1, 2002 12: 1100-1105; doi:10.1101/gr.208902

  • Single Nucleotide Polymorphism Mapping Using Genome-Wide Unique Sequences

    • Leslie Y.Y. Chen,
    • Szu-Hsien Lu,
    • Edward S.C. Shih,
    • and Ming-Jing Hwang
    Genome Res. July 1, 2002 12: 1106-1111; Published in Advance June 18, 2002, doi:10.1101/gr.224502

  • Interactive Exploration of Microarray Gene Expression Patterns in a Reduced Dimensional Space

    • Jatin Misra,
    • William Schmitt,
    • Daehee Hwang,
    • Li-Li Hsiao,
    • Steve Gullans,
    • George Stephanopoulos,
    • and Gregory Stephanopoulos
    Genome Res. July 1, 2002 12: 1112-1120; doi:10.1101/gr.225302

  • Pathway Processor: A Tool for Integrating Whole-Genome Expression Results into Metabolic Networks

    • Paul Grosu,
    • Jeffrey P. Townsend,
    • Daniel L. Hartl,
    • and Duccio Cavalieri
    Genome Res. July 1, 2002 12: 1121-1126; doi:10.1101/gr.226602

  • A Computer-Based Method of Selecting Clones for a Full-Length cDNA Project: Simultaneous Collection of Negligibly Redundant and Variant cDNAs

    • Naoki Osato,
    • Masayoshi Itoh,
    • Hideaki Konno,
    • Shinji Kondo,
    • Kazuhiro Shibata,
    • Piero Carninci,
    • Toshiyuki Shiraki,
    • Akira Shinagawa,
    • Takahiro Arakawa,
    • Shoshi Kikuchi,
    • Kouji Sato,
    • Jun Kawai,
    • and Yoshihide Hayashizaki
    Genome Res. July 1, 2002 12: 1127-1134; Published in Advance June 18, 2002, doi:10.1101/gr.75202

  • Validation of DNA Sequences Using Mass Spectrometry Coupled with Nucleoside Mass Tagging

    • Fadi A. Abdi,
    • Mark Mundt,
    • Norman Doggett,
    • E. Morton Bradbury,
    • and Xian Chen
    Genome Res. July 1, 2002 12: 1135-1141; doi:10.1101/gr.221402

RESOURCE

  • GFScan: A Gene Family Search Tool at Genomic DNA Level

    • Zhenyu Xuan,
    • W. Richard McCombie,
    • and Michael Q. Zhang
    Genome Res. July 1, 2002 12: 1142-1149; Published in Advance June 18, 2002, doi:10.1101/gr.220102
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This Issue

July 2002; 12 (7)
Cover
  1. INSIGHT/OUTLOOK
  2. ARTICLE
  3. LETTERS
  4. METHODS
  5. RESOURCE

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