Table 3.
Significant Marker Pairs from Genome-Wide Interaction Analysis
| Trait | Marker 1 (genotype) | Marker 2 (genotype) | Lod score | F-value | % variance | Significance level (α) |
| Tail suspension test | D11Mit271 (B6/B6) | DXMit172(B6/B6) | 5.9 | 27.8 | 4.7 | 0.01 |
| D6Mit183 (B6/B6) | D11Mit271 (B6/B6) | 5.0 | 21.0 | 3.6 | 0.05 |
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Threshold lod scores (F-values) for significance levels of α = 0.05 and 0.01 are 4.14 (20.6) and 5.09 (23.9), respectively, by permutation analysis.
