A Proteomic View on Genome-Based Signal Peptide Predictions

Table 6.

Plasmids, Strains, and Primers

Plasmids Relevant properties Reference
pMutin2 pBR322-based integration vector for B. subtilis; containing a multiple cloning site downstream of the Pspac promoter, and a promoterless lacZ-gene preceded by the RBS of thespoVG gene; 8.6 kb; APr; Emr Vagner et al. 1998
Strains
E. coli
 MC1061 F; araD139; Δ (ara-leu)7696; Δ (lac)X74; galU; galK; hsdR2; mcrA; mcrB1; rspL
B. subtilis
 168 trpC2 Kunst et al. 1997
 ΔS like 168; sipS; Kmr This paper
 ΔT like 168; sipT; Cmr This paper
 ΔU like 168; sipU; Kmr This paper
 ΔV like 168; sipV; Spr This paper
 ΔW like 168; sipW; Tcr This paper
 ΔTV like 168; sipT; Cmr;sipV; Spr This paper
 ΔTUV like 168; sipT; Cmr; sipU; Kmr;sipV; Spr This paper
 ΔTUVW like 168; sipT; Cmr; sipU; Kmr;sipV; Spr; sipW; Tcr This paper
 ΔlspA like 168; lspA::pMutin2;lsp-lacZ; Emr This paper
 Δlgt like 168; lgt::pMjtin2; lgt-lacZ; Emr: also known as LUH104 Bengston et al. 1999
 QB136 trpC2, leuA8, degU32(hy) Kunst et al. 1974
Primers 5′–3′
LytDvor AGGCACAACAACGACCTAC This paper
LytDT7rev CTAATACGACTCACTATAGGGAGATCTGCTGTTGATCCAGCTG This paper
XepAvor GCATACAGTCAGCTCGGG This paper
XepAT7rev CTAATACGACTCACTATAGGGAGAAATGTACTGGAGGCAGTGG This paper
XlyAvor GAAAACGGCTGGCATGCG This paper
XlyAT7rev CTAATACGACTCACTATAGGGAGATGCGTCAGCTGTTTTCGG This paper
YfiYvor TAATGAAGGAACAGAGGCG This paper
YfiYrev CTAATACGACTCACTATAGGGAGATTTCCATAGTGAACTGCTTG This paper
OppAvor AATGATTCAGTATCAGGCGG This paper
OppArev CTAATACGACTCACTATAGGGAGATACTGCTTGAGCGATTTTCG This paper
MntAvor TTGCGACCTTTGCTTTAACG This paper
MntArev CTAATACGACTCACTATAGGGAGATCTTTTGTGCCCTTTTCACC This paper
YvcEvor AGCAATCTGAGGTTGCTTCC This paper
YvcET7rev CTAATACGACTCACTATAGGGAGACTTGAACCAACGCTGATCGC This paper
YxeBvor GTCACTGATTTTTATGCCGG This paper
YxeBT7rev CTAATACGACTCACTATAGGGAGAGTCGTACGGGTAGAACGAGT This paper

This Article

  1. Genome Res. 11: 1484-1502

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