First Pass Annotation of Promoters on Human Chromosome 22

Table 1.

Experimentally Verified Promoters on Human Chromosome 22

Accession no. Gene Strand Annotated gene start relative to promoter PromoterInspector predicted CpG island predicted
L43122 CONT + within promoter • (224 bp)
X52828 BCR + within promoter • (1088 bp) • (1914 bp)
X84664 MMP11 + 18 bp downstream • (216 bp) • (591 bp)
AJ007494 GGT1 + 20,000 bp downstream
X72990 EWSR1 + within promoter • (1092 bp) • (1284 bp)
M63420 LIF 12 bp upstream • (236 bp) • (473 bp)
AF129855 OSM within promoter
AF047576 TCN2 + 81 bp downstream
AB016655 LIMK2 + within promoter • (452 bp) • (520 bp)
S79779 TIMP3 + 120 bp downstream • (624 bp) • (886 bp)
S58267 HMOX1 + within promoter
EP11091 MB within promoter
X63578 PVALB within promoter
X53093 IL2RB 9 bp upstream
M87841 H1F0 + within promoter • (1018 bp)
AF115252 PLA2G6 12,000 bp downstream (93 bp exon 1 missing) • (224 bp)
EP11139 PDGFB 931 bp downstream • (860 bp) • (2928 bp)
AF106656 ADSL + 49 bp downstream • (1059 bp)
D86746 SREBF2 + within promoter • (820 bp) • (1476 bp)
M77378 ACR + within promoter
Total: 20 genes 10 (50%) 10 (50%)
  • Promoter sequences published separately, no continuous mRNA sequence available. All sequences are taken from GenBank/EMBL/EPD. See accession numbers for reference.

  • EPD accession numbers.

This Article

  1. Genome Res. 11: 333-340

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