Evolution of Gene Order in the Genomes of Two Related Yeast Species

Table 1.

Nonsyntenic Gene Couples Having Ambiguous Matches

Gene couples Insert name Localization
(SuYFL062w/SuYGR295c) -SuYLR098c AS0AA001E07 (subtelomeric)–internal
(SuYFL062w/SuYGR295c/SuYNL336w) -SuYPR194c AS0AA015G05 (subtelomeric)–subtelomeric
(SuYFL062w/SuYGR295c/SuYNL336w) -SuYIR039c AS0AA003A08 (subtelomeric)–subtelomeric
(SuYOR389w/SuYPL277c) -SuYIR039c AS0AA008E06 (subtelomeric)–subtelomeric
(SuYOR389w/SuYPL277c) -SuYGR234w AS0AA024A10 (subtelomeric)–internal
(SuYOR390w/SuYPL279c) -SuYDR017c AS0AA002G12 (subtelomeric)–internal
(SuYLR448w/SuYML073c) -SuYHR029c AS0AA018C09 (internal)–internal
(SuYOR394w/SuYPL282c) - (SuYFL050c/SuYOL130w) AS0AA018C10 (subtelomeric)–(subtelomeric/internal)
(SuYOR394w/SuYPL282c) -SuYER014w XAS0AA001A04 (subtelomeric)–internal
(SuYAL068c/SuYBR301w/SuYEL049w/SuYGL261c/SuYGR294w/ SuYHL046c/SuYIL176c/SuYJL223c/SuYLL064c/SuYLR461w/ SuYNR076w/SuYOL161c/SuYOR394w/SuYPL282c) - SuYJL056c XAS0AA001B11 (subtelomeric except forSuYEL049winternal)–internal
(SuYAR027w/SuYCR007c) - (SuYMR048w/SuYMR049c) AS0AA022E09 (internal)–(internal)
(SuYOR071c/SuYLR237w/SuYOR192c) - (SuYJL190c/SuYLR367w) AS0AA023A08 (internal)–(internal)
(SuYLR237w/SuYOR192c) - (SuYLR367w/SuYLR368w) AS0AA028G09 (internal)–(internal)
(SuYDL246c/SuYJR159w) -SuYOR187w AS0AA028G01 (subtelomeric)–internal
(SuYDL246c/SuYJR159w) - (SuYHR210c/SuYNR071c) XAS0AA001E07 (subtelomeric)–(subtelomeric)
(SuYBL017c/SuYNR066c/SuYIL173w/SuYJL222w) - SuYNL040w AS0AA005C08 (subtelomeric except forSuYBL017c internal)–internal
  • Ambiguous matches corresponding to a single S. uvarumORF are grouped into brackets. Matches corresponding to each of the two RSTs of the same plasmid insert are separated by a dash. Brackets also relate to the grouping of ambiguous matches in the Localization column. To retrieve the RST sequences inhttp://cbi.labri.u-bordeaux.fr/Genolevures, add the suffix DP1 or TP1 to the name of the corresponding plasmid insert. This list comprises the two non-syntenic gene couples SuYNL040w-SuYBL017c andSuYPL273w-SuYOL130w, which were initially classified in the non-ambiguous matches category (Bon et al. 2000).

This Article

  1. Genome Res. 11: 2009-2019

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