Volume 11, Issue 12 | December 2001

COMMENTARIES
- - Is There a Bias in Proteome Research?
    Ralf Mrowka
    Andreas Patzak
    Hanspeter Herzel
    First Published December 1, 2001
  - Most of the Human Genome Is Transcribed
    Gane Ka-Shu Wong
    Douglas A. Passey
    Jun Yu
    First Published December 1, 2001
ARTICLES
- - A Gene Expression Screen in Zebrafish Embryogenesis
    Tetsuhiro Kudoh
    Michael Tsang
    Neil A. Hukriede
    Xiongfong Chen
    Michael Dedekian
    Christopher J. Clarke Anne Kiang
    ...[+2 authors]...,
    Stephanie Schultz
    Jonathan A. Epstein
    Reiko Toyama
    Igor B. Dawid
    First Published November 12, 2001
  - Genomic Dissection of Genotype × Environment Interactions Conferring Adaptation of Cotton to Arid Conditions
    Yehoshua Saranga
    Mónica Menz
    Chun-Xiao Jiang
    Robert J. Wright
    Dan Yakir
    First Published December 1, 2001
  - Novel Protein Domains and Repeats in Drosophila melanogaster: Insights into Structure, Function, and Evolution
    Chris P. Ponting
    Richard Mott
    Peer Bork
    Richard R. Copley
    First Published November 12, 2001
  - Evolution of Gene Order in the Genomes of Two Related Yeast Species
    Gilles Fischer
    Cécile Neuvéglise
    Pascal Durrens
    Claude Gaillardin
    Bernard Dujon
    First Published December 1, 2001
LETTERS
- - Comparative Genomics Between Rice and Arabidopsis Shows Scant Collinearity in Gene Order
    Hong Liu
    Ravi Sachidanandam
    Lincoln Stein
    First Published December 1, 2001
  - Identification of Wound Healing/Regeneration Quantitative Trait Loci (QTL) at Multiple Time Points that Explain Seventy Percent of Variance in (MRL/MpJ and SJL/J) Mice F2 Population
    Godfred L. Masinde
    Xinmin Li
    Weikuan Gu
    Heather Davidson
    Subburaman Mohan
    First Published December 1, 2001
  - Identification of Genes Encoding Amino Acid Permeases by Inactivation of Selected ORFs from the Synechocystis Genomic Sequence
    Marı́a José Quintero
    Marı́a Luz Montesinos
    Antonia Herrero
    Enrique Flores
    First Published December 1, 2001
  - Envelope-Class Retrovirus-Like Elements Are Widespread, Transcribed and Spliced, and Insertionally Polymorphic in Plants
    Carlos M. Vicient
    Ruslan Kalendar
    Alan H. Schulman
    First Published December 1, 2001
  - Genomic Characterization of Recent Human LINE-1 Insertions: Evidence Supporting Random Insertion
    Igor Ovchinnikov
    Andrea B. Troxel
    Gary D. Swergold
    First Published November 12, 2001
  - Twin Priming: A Proposed Mechanism for the Creation of Inversions in L1 Retrotransposition
    Eric M. Ostertag
    Haig H. Kazazian
    First Published December 1, 2001
  - Evolutionary History of Cer Elements and Their Impact on the C. elegans Genome
    Eric W. Ganko
    Kevin T. Fielman
    John F. McDonald
    First Published December 1, 2001
  - QTL Analysis in a Complex Autopolyploid: Genetic Control of Sugar Content in Sugarcane
    Ray Ming
    Sin-Chieh Liu
    Paul H. Moore
    James E. Irvine
    Andrew H. Paterson
    First Published November 12, 2001
  - Comparative Sequence Analysis of the Imprinted Dlk1–Gtl2 Locus in Three Mammalian Species Reveals Highly Conserved Genomic Elements and Refines Comparison with the Igf2–H19 Region
    Martina Paulsen
    Shuji Takada
    Neil A. Youngson
    Mehdi Benchaib
    Carole Charlier
    First Published December 1, 2001
  - Differential Divergence of Three Human Pseudoautosomal Genes and Their Mouse Homologs: Implications for Sex Chromosome Evolution
    Fernando Gianfrancesco
    Remo Sanges
    Teresa Esposito
    Sergio Tempesta
    Ercole Rao
    Gudrun Rappold
    ...[+1 authors]...,
    Nicoletta Archidiacono
    Jennifer A.M. Graves
    Antonino Forabosco
    Michele D'Urso
    First Published December 1, 2001
  - Evolution of Intron/Exon Structure of DEAD Helicase Family Genes in Arabidopsis, Caenorhabditis, and Drosophila
    Nathalie Boudet
    Sébastien Aubourg
    Claire Toffano-Nioche
    Martin Kreis
    Alain Lecharny
    First Published November 12, 2001
METHODS
- - Trimming, Weighting, and Grouping SNPs in Human Case-Control Association Studies
    Josephine Hoh
    Anja Wille
    Jurg Ott
    First Published December 1, 2001
  - Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”
    Lisa R. Matthews
    Philippe Vaglio
    Jérôme Reboul
    Hui Ge
    Brian P. Davis
    First Published December 1, 2001
RESOURCES
- - The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences
    Neil Hukriede
    Dan Fisher
    Jonathan Epstein
    Lucille Joly
    Patricia Tellis
    Yi Zhou Brad Barbazuk Kristine Cox Laura Fenton-Noriega Candace Hersey Jennifer Miles Xiaoming Sheng Anhua Song Rick Waterman Stephen L. Johnson Igor B. Dawid
    ...[+11 authors]...,
    Mario Chevrette
    Leonard I. Zon
    John McPherson
    Marc Ekker
    First Published November 12, 2001
  - Toward a Cytological Characterization of the Rice Genome
    Zhukuan Cheng
    C. Robin Buell
    Rod A. Wing
    Minghong Gu
    Jiming Jiang
    First Published December 1, 2001
  - Advanced Integrated Mouse YAC Map Including BAC Framework
    Leonard C. Schalkwyk
    Brian Cusack
    Ilona Dunkel
    Martina Hopp
    Markus Kramer
    Stefanie Palczewski Jutta Piefke Sabine Scheel
    ...[+3 authors]...,
    Michael Weiher
    Gunther Wenske
    Hans Lehrach
    Heinz Himmelbauer
    First Published December 1, 2001
  - GeneLynx: A Gene-Centric Portal to the Human Genome
    Boris Lenhard
    William S. Hayes
    Wyeth W. Wasserman
    First Published December 1, 2001

Table of Contents

Volume 11, Issue 12 | December 2001

COMMENTARIES

Is There a Bias in Proteome Research?

Most of the Human Genome Is Transcribed

ARTICLES

A Gene Expression Screen in Zebrafish Embryogenesis

Genomic Dissection of Genotype × Environment Interactions Conferring Adaptation of Cotton to Arid Conditions

Novel Protein Domains and Repeats in Drosophila melanogaster: Insights into Structure, Function, and Evolution

Evolution of Gene Order in the Genomes of Two Related Yeast Species

LETTERS

Comparative Genomics Between Rice and Arabidopsis Shows Scant Collinearity in Gene Order

Identification of Wound Healing/Regeneration Quantitative Trait Loci (QTL) at Multiple Time Points that Explain Seventy Percent of Variance in (MRL/MpJ and SJL/J) Mice F2 Population

Identification of Genes Encoding Amino Acid Permeases by Inactivation of Selected ORFs from the Synechocystis Genomic Sequence

Envelope-Class Retrovirus-Like Elements Are Widespread, Transcribed and Spliced, and Insertionally Polymorphic in Plants

Genomic Characterization of Recent Human LINE-1 Insertions: Evidence Supporting Random Insertion

Twin Priming: A Proposed Mechanism for the Creation of Inversions in L1 Retrotransposition

Evolutionary History of Cer Elements and Their Impact on the C. elegans Genome

QTL Analysis in a Complex Autopolyploid: Genetic Control of Sugar Content in Sugarcane

Comparative Sequence Analysis of the Imprinted Dlk1–Gtl2 Locus in Three Mammalian Species Reveals Highly Conserved Genomic Elements and Refines Comparison with the Igf2–H19 Region

Differential Divergence of Three Human Pseudoautosomal Genes and Their Mouse Homologs: Implications for Sex Chromosome Evolution

Evolution of Intron/Exon Structure of DEAD Helicase Family Genes in Arabidopsis, Caenorhabditis, and Drosophila

METHODS

Trimming, Weighting, and Grouping SNPs in Human Case-Control Association Studies

Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”

RESOURCES

The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences

Toward a Cytological Characterization of the Rice Genome

Advanced Integrated Mouse YAC Map Including BAC Framework

GeneLynx: A Gene-Centric Portal to the Human Genome

Table of Contents

Volume 11, Issue 12 | December 2001

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COMMENTARIES

ARTICLES

LETTERS

METHODS

RESOURCES