Conservation, Regulation, Synteny, and Introns in a Large-scale C. briggsae–C. elegans Genomic Alignment

Table 4.

Distribution of Highly Conserved Regions Comparing the Number of Places a Region Aligns vs. Whether the Region is Coding, Intronic, or Intergenic

Places aligned Coding bases Intronic bases Intergenic bases Total bases
 1 985406 434809 585204 2005419
 2–3 214411 31393 27843 273647
 4–7 84001 7957 3286 95244
 8–15 54318 8482 609 63409
16–31 25687 2752 0 28439
32 124 0 0 124
  Totals 1363947 484393 616942 2465282
  • The table lists the number of C. briggsae bases in each category. Coding/Intron/Intergenic classification is based on the C. elegans Sequencing Consortium (1998) gene predictions for the corresponding C. elegans regions. Eighty-one percent of the highly conserved bases align to a unique part of the C. elegans genome.

This Article

  1. Genome Res. 10: 1115-1125

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