Table 2.
Percentages of Sequences with Detectable Homologs in Various Databases
| Database | |||||||||||||
| Query set | Cutoff | SC | NF | HMEST | NF + HMEST | any | |||||||
| E ≤ 0.01 | E ≤ 10−5 | E ≤ 0.01 | E ≤ 10−5 | E ≤ 0.01 | E ≤ 10−5 | E ≤ 0.01 | E ≤ 10−5 | E ≤ 0.01 | E ≤ 10−5 | ||||
| Ncr ESTs | 31.4 | 26.6 | 29.5 | 24.0 | 28.5 | 20.5 | 35.2 | 26.0 | 41.2 | 31.2 | |||
| Scer ESTs | N.A. | 47.6 | 40.1 | 44.7 | 38.8 | 51.4 | 44.2 | N.A. | |||||
| Ncr discontigs | 40.2 | 33.2 | 37.0 | 30.3 | 34.9 | 24.9 | 44.3 | 33.1 | 52.0 | 39.9 | |||
| SC | N.A. | 62.9 | 54.4 | 50.3 | 43.8 | 65.6 | 57.2 | N.A. | |||||
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↵See Table 1 for descriptions of databases and query sets.
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↵Homologs detected at the indicated cutoffs in either NF or HMEST.
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↵Homologs detected at the indicated cutoffs in any of SC, NF, or HMEST.
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↵(N.A.) not applicable (S. cerevisiae queries were not compared with S. cerevisiae databases).
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↵A discontig was counted as having a detectable homolog at a given cutoff if any of the component contigs did.
